Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_D06
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 176 3e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 171 1e-43
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.28
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 6.1
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 8.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 176 bits (429), Expect = 3e-45
Identities = 80/121 (66%), Positives = 98/121 (80%)
Frame = +2
Query: 95 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 274
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 275 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 454
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 455 P 457
P
Sbjct: 130 P 130
Score = 122 bits (293), Expect = 9e-29
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = +3
Query: 465 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 644
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192
Query: 645 PRDQRWDVVVDLFFYRDPEESEKDEQQ 725
R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 171 bits (416), Expect = 1e-43
Identities = 75/125 (60%), Positives = 99/125 (79%)
Frame = +2
Query: 83 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 262
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 263 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 442
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 443 IVLDP 457
+V DP
Sbjct: 125 VVTDP 129
Score = 124 bits (298), Expect = 2e-29
Identities = 58/86 (67%), Positives = 68/86 (79%)
Frame = +3
Query: 465 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 644
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Query: 645 PRDQRWDVVVDLFFYRDPEESEKDEQ 722
R WDV+ DL+FYRDPEE E++E+
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVEREEE 217
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 483 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 617
EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 218 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 394
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 480 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 590
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 588 IGLMWWLLAREVLRLRGVLPRDQRWD 665
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 643 FPVTSAGML--WLICSSTVTLKKVKRM 717
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,728,198
Number of Sequences: 5004
Number of extensions: 84076
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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