Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_D06
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.69 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 670 TTSQRWSRGSTPRSLNTSRANNHHIKP 590
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 670 TTSQRWSRGSTPRSLNTSRANNHHIKP 590
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 633 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQARNRLW 743
           R +LPR ++  +   LF Y  P  SE +  Q  +R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYN--QYNSRIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 633 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQARNRLW 743
           R +LPR ++  +   LF Y  P  SE +  Q  +R+W
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYN--QYNSRIW 637


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 681 TNQPQHPSAGHGEAHHEASTLH 616
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
 Frame = -2

Query: 755 WLAVPQPVP------GLLFILFTF 702
           WL  P+P P       LL+ILFTF
Sbjct: 37  WLVYPEPNPSLHYLLALLYILFTF 60


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 728 GLLFILFTFFRVTVEEQ 678
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 728 GLLFILFTFFRVTVEEQ 678
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 23  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 199
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 200 -RADGTH 217
            +A+  H
Sbjct: 286 YQANNVH 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,660
Number of Sequences: 438
Number of extensions: 5859
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)