Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_D05
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.51 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     26   0.51 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 767 VLRGSFFVCQTRSDTFVSFALGDTNAVNHFILGKHRIXQG*VSPDV 630
           +  G + V +T   +F++           F++G+HRI +G  +PD+
Sbjct: 379 IQNGDYVVLETEWSSFIN----PWTKKLEFVVGQHRILKGPANPDI 420


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 767 VLRGSFFVCQTRSDTFVSFALGDTNAVNHFILGKHRIXQG*VSPDV 630
           +  G + V +T   +F++           F++G+HRI +G  +PD+
Sbjct: 85  IQNGDYVVLETEWSSFIN----PWTKKLEFVVGQHRILKGPANPDI 126


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 266 MVTASTISFLLIFEPGRSGSLTTWVI 189
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 274 TPPXGLCRCCWIH*DPSWTTRSFDCLG 354
           T P G C+C   + D +W T + DC G
Sbjct: 760 TCPAG-CKC---YNDRTWNTNAVDCSG 782


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,785
Number of Sequences: 438
Number of extensions: 4519
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)