Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_C08
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 176 3e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 171 1e-43
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.26
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 27 2.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.7
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.9
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 25 9.9
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.9
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 176 bits (429), Expect = 3e-45
Identities = 80/121 (66%), Positives = 98/121 (80%)
Frame = +2
Query: 83 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 262
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 263 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 442
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 443 P 445
P
Sbjct: 130 P 130
Score = 110 bits (265), Expect = 2e-25
Identities = 52/83 (62%), Positives = 64/83 (77%)
Frame = +3
Query: 453 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 632
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192
Query: 633 PRDQRWDVVVDLFFYRDLKKVKR 701
R W+V+ DL+FYRD ++++R
Sbjct: 193 SRTTAWEVMPDLYFYRDPEEIER 215
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 171 bits (416), Expect = 1e-43
Identities = 75/125 (60%), Positives = 99/125 (79%)
Frame = +2
Query: 71 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 250
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 251 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 430
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 431 IVLDP 445
+V DP
Sbjct: 125 VVTDP 129
Score = 115 bits (276), Expect = 9e-27
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +3
Query: 453 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 632
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Query: 633 PRDQRWDVVVDLFFYRDLKKVKR 701
R WDV+ DL+FYRD ++V+R
Sbjct: 192 SRSAPWDVMPDLYFYRDPEEVER 214
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 471 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 605
EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 206 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 382
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 468 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 578
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 706 FILFTFFRSR*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPI 575
FIL T S + S+ RW STP SL S N+ + +
Sbjct: 295 FILATVVGSDEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAV 338
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 576 IGLMWWLLAREVLRLRGVLPRDQRWD 653
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -1
Query: 290 RTHQRGSRWLRQHEQPEQVFPRYDA 216
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 442 VQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHISGVLDG 263
++ E F + +S + W T + + G+RG ++ EGP D H SGV G
Sbjct: 176 IRAEAEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SADLH-SGVFGG 233
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 812 RFSAHEPLAPXFIPVFMDRSNYFWLAGTTACSWLXVHPFHFLQVTVE 672
RFS HE ++ FI F+ ++ + A CS P FL+ ++
Sbjct: 120 RFSIHEYVSDEFILSFLPFHDHPFFARILGCSKPKSRPLLFLENAIK 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,766,307
Number of Sequences: 5004
Number of extensions: 84320
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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