Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_C08
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.65 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.65 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 658 TTSQRWSRGSTPRSLNTSRANNHHIKP 578
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 658 TTSQRWSRGSTPRSLNTSRANNHHIKP 578
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 669 TNQPQHPSAGHGEAHHEASTLH 604
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 715 GLXFILFTFFRSR*KNKST 659
           G+ F+LF+F R+R K + T
Sbjct: 20  GVLFVLFSFLRTRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 715 GLXFILFTFFRSR*KNKST 659
           G+ F+LF+F R+R K + T
Sbjct: 20  GVLFVLFSFLRTRTKLQPT 38


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 11  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 187
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 188 -RADGTH 205
            +A+  H
Sbjct: 286 YQANNVH 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,080
Number of Sequences: 438
Number of extensions: 6083
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)