Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_C02
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 293 2e-80
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 183 3e-47
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 163 4e-41
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 161 9e-41
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 142 7e-35
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 140 2e-34
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 140 2e-34
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 136 5e-33
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 132 5e-32
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 131 1e-31
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 128 1e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 125 9e-30
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 123 4e-29
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 118 1e-27
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 111 2e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 111 2e-25
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 104 1e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 103 4e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 99 7e-22
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 97 3e-21
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 96 5e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 94 3e-20
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 87 2e-18
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 39 0.001
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 33 0.067
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.067
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.12
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 30 0.47
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 30 0.47
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 30 0.47
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 29 0.63
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.5
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 3.3
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 27 3.3
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 3.3
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 3.3
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 3.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.4
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 4.4
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 5.8
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 5.8
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 7.7
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 7.7
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 7.7
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 293 bits (720), Expect = 2e-80
Identities = 140/233 (60%), Positives = 183/233 (78%), Gaps = 4/233 (1%)
Frame = +3
Query: 117 EKMTADKE--SYGDETNQDSEVEQTPTENVTEDTEDDKI--TFKDLGVVDVLCEACEELK 284
+K+T DK+ S + + + +EN D+++++ TFK+LGV+D LCEACE+L
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 285 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRE 464
+K P+ IQ+EAIPV L +D+IGLA+TGSGKT AFALP++Q L NP +FA++L PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 465 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 644
LA+QISEQFEA+G SIGV+ VIVGGMDMV QA+ LSKKPH+++ TPGRL+DHLENTKGF
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Query: 645 NLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRERXTYLFSATLTKKVXKLQ 803
+L+ LKYL+MDEADR+L+MDF +DKIL++IP ER T LFSAT+T KV KLQ
Sbjct: 186 SLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQ 238
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 183 bits (445), Expect = 3e-47
Identities = 96/203 (47%), Positives = 138/203 (67%), Gaps = 5/203 (2%)
Frame = +3
Query: 210 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 389
+E + +F DLG+ L + + L +P+ IQ+ I L G++ IG A+TGSGKT AF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 390 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 569
ALPI++ ++P FALILTPTRELA QI EQF ALGA++ +K A+IVGGMDM+ Q++
Sbjct: 62 ALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 570 LSKKPHIIIATPGRLVDHLENTKG---FNLRXLKYLVMDEADRILNMDFEVEVDKILRVI 740
LSK+PH+++ATPGRL D + + LR +K+LVMDEADR+L+ F ++D V+
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 741 P--RERXTYLFSATLTKKVXKLQ 803
P +R T LF+AT+T + +L+
Sbjct: 182 PASEDRQTLLFTATVTDAIRQLK 204
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 163 bits (395), Expect = 4e-41
Identities = 81/194 (41%), Positives = 123/194 (63%), Gaps = 3/194 (1%)
Frame = +3
Query: 228 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 407
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 408 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 578
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 579 KPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRERXT 758
+P I+IATPGR +DH+ N++GF + ++ +VMDEADR+L F E+++I++ P+ R T
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 759 YLFSATLTKKVXKL 800
LFSAT+T KV L
Sbjct: 440 MLFSATMTDKVDDL 453
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 161 bits (392), Expect = 9e-41
Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 6/240 (2%)
Frame = +3
Query: 99 QNNDNLEKMTADKESYG-DETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACE 275
+N D + + + ES D N+D V+++ N + ++ +K F DL + + + +A +
Sbjct: 48 ENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEK--FSDLQLSENIQKAIK 105
Query: 276 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP---ILQALLENPQRYFA-L 443
E+ ++ ++IQK +IP L G+D++G A+TGSGKT AF +P +L AL P+ +
Sbjct: 106 EMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI 165
Query: 444 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 623
I++PTRELA QI + L +++GG + A+A L K ++++ATPGRL+DH
Sbjct: 166 IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDH 225
Query: 624 LENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRE-RXTYLFSATLTKKVXKL 800
L+NTKGF R L+ LV+DEADRIL + FE E+ +I++++P E R T LFSAT T KV L
Sbjct: 226 LQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDL 285
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 142 bits (343), Expect = 7e-35
Identities = 76/188 (40%), Positives = 117/188 (62%), Gaps = 8/188 (4%)
Frame = +3
Query: 204 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 383
+D + +++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
Query: 384 AFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVG 539
AF +P++ A+ + P +A++L PTRELA QI + +G +C +VG
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 540 GMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEV 719
G Q+ +S+ HI++ATPGRL+D LE + F L Y+VMDEADR+L+M FE +V
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDV 420
Query: 720 DKILRVIP 743
+KIL +P
Sbjct: 421 NKILSSLP 428
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 140 bits (339), Expect = 2e-34
Identities = 78/196 (39%), Positives = 122/196 (62%), Gaps = 5/196 (2%)
Frame = +3
Query: 228 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 404
TF++ G + + + ++L ++ P+ IQ++A P+A+ G+D++G++ TGSGKT ++ LP +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 405 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 572
Q LL L+L PTRELA QI ++ G S ++ + GG+ Q L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 573 SKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRER 752
+ I IATPGRL+D L++ K NLR + YLV+DEADR+L+M FE ++ KI+ I +R
Sbjct: 243 IRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 301
Query: 753 XTYLFSATLTKKVXKL 800
T +FSAT K+V +L
Sbjct: 302 QTVMFSATWPKEVQRL 317
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 140 bits (339), Expect = 2e-34
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 3/188 (1%)
Frame = +3
Query: 231 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 410
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 411 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 581
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 582 PHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRERXTY 761
P I++ATPGR + HL+ L ++Y+V DEADR+ M F ++ +IL +P R T
Sbjct: 190 PDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTL 248
Query: 762 LFSATLTK 785
LFSATL +
Sbjct: 249 LFSATLPR 256
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 136 bits (328), Expect = 5e-33
Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 11/194 (5%)
Frame = +3
Query: 285 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 458
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 459 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL-ENT 635
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPGRL + EN
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENN 261
Query: 636 KGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPR----ERXTYLFSAT----LTKKV 791
N + +K LV+DEADR+L E+ K+L ++ +R T++FSAT L +++
Sbjct: 262 LTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRL 321
Query: 792 XKLQXGXITRSCXS 833
K G IT S
Sbjct: 322 KKNMKGNITEKYNS 335
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 132 bits (320), Expect = 5e-32
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 5/241 (2%)
Frame = +3
Query: 93 IPQNNDNLEKMTADKESYGDETNQDSEVEQTPTE-NVTEDTEDDKITFKDLGVVDVLCEA 269
+P+N + +K+ ++ E+E+ ++ +T D F +L + A
Sbjct: 1 MPKNRTGRSREAREKK----RKEEEEEIEELNSQIEALSETVDH---FAELPLTQPTKSA 53
Query: 270 CEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF---- 437
+ + ++IQK+ IP AL G+DI+G A+TGSGKT AF +P+++ L
Sbjct: 54 LKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG 113
Query: 438 ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLV 617
AL+++PTRELA Q E +G +I+GG + + LS+ +I++ TPGRL+
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRLL 172
Query: 618 DHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRERXTYLFSATLTKKVXK 797
H++ F+ L+ L++DEADRIL+M F +D I+ +P R T LFSAT TK V
Sbjct: 173 QHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKD 232
Query: 798 L 800
L
Sbjct: 233 L 233
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 131 bits (316), Expect = 1e-31
Identities = 79/205 (38%), Positives = 116/205 (56%), Gaps = 8/205 (3%)
Frame = +3
Query: 213 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 392
E + TF D + L A + +++KP+ +Q E IP+AL GKD++ A TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 393 LPILQALL------ENPQRYFALILTPTRELAFQISEQFEALGA--SIGVKCAVIVGGMD 548
+PIL+ LL EN + FAL+L PTRELA Q+ E L A S ++ +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 549 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKI 728
Q +L P I+IATP R V H+ + L LK+LV+DEAD +L+ + ++ +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
Query: 729 LRVIPRERXTYLFSATLTKKVXKLQ 803
R +PR ++L SATL+K + LQ
Sbjct: 189 SRSLPRGTQSFLMSATLSKNIASLQ 213
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 128 bits (308), Expect = 1e-30
Identities = 74/215 (34%), Positives = 118/215 (54%)
Frame = +3
Query: 132 DKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQK 311
D+ES+ + + TE+VT+ + F+D + L E +++PS IQ+
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTE---FEDYYLKRELLMGIFEAGFERPSPIQE 72
Query: 312 EAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQF 491
E+IP+AL G+DI+ A+ G+GKT AF +P L+ + + LIL PTRELA Q S+
Sbjct: 73 ESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVC 132
Query: 492 EALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLV 671
+ LG + VK V GG + + L+ HI++ TPGR++D L + V
Sbjct: 133 KTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFV 191
Query: 672 MDEADRILNMDFEVEVDKILRVIPRERXTYLFSAT 776
MDEAD++L+ +F ++++L P+ R L+SAT
Sbjct: 192 MDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSAT 226
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 125 bits (301), Expect = 9e-30
Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 7/181 (3%)
Frame = +3
Query: 279 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFAL 443
L ++KP+ IQ +AIP G+D+IG+A+TGSGKT AF LP+ Q L+ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 444 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 623
I+TPTRELA QI + + + ++ GG + Q L + I++ TPGR++D
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query: 624 LENTKG--FNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRERXTYLFSATLTKKVXK 797
L G NL YLV+DEADR+ ++ FE +V +I+ I +R T LFSAT + +
Sbjct: 556 LSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEA 615
Query: 798 L 800
L
Sbjct: 616 L 616
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 123 bits (296), Expect = 4e-29
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 9/234 (3%)
Frame = +3
Query: 126 TADKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELK-WKKPSK 302
+A+ ++ DE D +++ + ++ + +DV + E LK +K+P+
Sbjct: 131 SANASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTP 190
Query: 303 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ---ALLENPQRYFALILTPTRELAF 473
IQ P L G+D++G+AETGSGKT AF +P LQ L +N L+++PTRELA
Sbjct: 191 IQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAI 250
Query: 474 QISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLR 653
Q E +L +K V+ GG QA +K +II TPGRL+D L N +
Sbjct: 251 QTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLD-LINDGSIDCS 308
Query: 654 XLKYLVMDEADRILNMDFEVEVDKILRVIP-----RERXTYLFSATLTKKVXKL 800
+ YLV+DEADR+L+ FE ++ I+ P R T FSAT + V L
Sbjct: 309 QVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRAL 362
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 118 bits (283), Expect = 1e-27
Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 3/206 (1%)
Frame = +3
Query: 192 ENVTEDTEDDK---ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAE 362
ENV T +D +F+++ + + L ++ PS +Q AI G+D+I A+
Sbjct: 7 ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66
Query: 363 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 542
+G+GKT F++ ILQ++ + + ALIL+PTRELA QI ALG + V+C +GG
Sbjct: 67 SGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Query: 543 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVD 722
+ L H++ TPGR+ D + + R +K L++DEAD +LN F+ ++
Sbjct: 127 TSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 723 KILRVIPRERXTYLFSATLTKKVXKL 800
I R +P + SATL + V ++
Sbjct: 186 DIYRYLPPGTQVVVVSATLPQDVLEM 211
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 111 bits (266), Expect = 2e-25
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 5/192 (2%)
Frame = +3
Query: 231 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 410
F+D + L A + ++ PS++Q+ IP ++LG D++ A++G GKT F L LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 411 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALML---SK 578
+ L+L TRELAFQI ++ + V+ AV GG+++ SK
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 579 KPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRIL-NMDFEVEVDKILRVIPRERX 755
PHI++ATPGRL + L K + +K+ V+DE D++L ++D ++ ++ R P ++
Sbjct: 173 SPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231
Query: 756 TYLFSATLTKKV 791
+FSATL+ ++
Sbjct: 232 VMMFSATLSNEI 243
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 111 bits (266), Expect = 2e-25
Identities = 64/204 (31%), Positives = 113/204 (55%), Gaps = 1/204 (0%)
Frame = +3
Query: 192 ENVTEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 368
++V E D+ I TF D+ + L +++PS IQ+ AI L +D++ A++G
Sbjct: 7 DSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSG 66
Query: 369 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 548
+GKT F++ +LQ + + ++ ALIL PTRELA QI + ALG + V+C +GG
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 549 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKI 728
+ L H+++ TPGR+ D ++ + ++ V+DEAD +L+ F+ ++ I
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDI 185
Query: 729 LRVIPRERXTYLFSATLTKKVXKL 800
+++P L SAT+ + V ++
Sbjct: 186 FQLLPPTAQVVLLSATMPQDVLEV 209
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 104 bits (250), Expect = 1e-23
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Frame = +3
Query: 285 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-------------- 422
+ +P+ +QK +IP+ G+D++ A+TGSGKT F PIL +
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMG 248
Query: 423 --PQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 590
P++ + LIL PTREL QI E+ V+ + GG D+ AQ + + +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 591 IIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILR----VIPRERXT 758
+ ATPGRLVD ++ + +L +K+LV+DEADR+L+M FE ++ I+ ER T
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 759 YLFSATLTKKVXKL 800
+FSAT + + L
Sbjct: 368 LMFSATFPRDIQLL 381
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 103 bits (246), Expect = 4e-23
Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 29/252 (11%)
Frame = +3
Query: 132 DKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKK----PS 299
D E + + Q+ E Q T++ + I + V + + + L K P+
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPT 163
Query: 300 KIQKEAIPVALL--GKDIIGLAETGSGKTGAFALPILQALLENPQRY-------FALILT 452
IQ +P L KD A+TGSGKT A+ LPI+Q L+ P+ +A+I+
Sbjct: 164 AIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMA 223
Query: 453 PTRELAFQISEQFEALG---ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 623
PTREL QI L S + ++GG ++ + K +I+I TPGRL DH
Sbjct: 224 PTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADH 283
Query: 624 LENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRV-------------IPRERXTYL 764
LENT+ ++ ++++V+DE DR+++M FE + KIL IP + T L
Sbjct: 284 LENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTML 343
Query: 765 FSATLTKKVXKL 800
SAT+ V +L
Sbjct: 344 CSATMKDTVKRL 355
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 99.1 bits (236), Expect = 7e-22
Identities = 65/193 (33%), Positives = 111/193 (57%), Gaps = 3/193 (1%)
Frame = +3
Query: 228 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG--KDIIGLAETGSGKTGAFALPI 401
+F++L + L + +K++KPSKIQ++A+P+ L +++IG +++G+GKT AFAL +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 402 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 581
L + + + A+ L P+RELA QI + +G VK A G D V + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ 232
Query: 582 PHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMD-FEVEVDKILRVIPRERXT 758
I+I TPG ++D L + + R +K V+DEAD +L+ + +I ++PR
Sbjct: 233 --IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 759 YLFSATLTKKVXK 797
LFSAT +++V K
Sbjct: 290 VLFSATFSERVEK 302
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 97.1 bits (231), Expect = 3e-21
Identities = 66/185 (35%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Frame = +3
Query: 255 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-LENPQR 431
+LCE ++ + + IQ+ AIP +D++ A TGSGKT A+ PILQ L L P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 432 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ-ALMLSKKPHIIIATPG 608
Y A+I+ PTREL QI Q E L +K + + + + A L +K + I TP
Sbjct: 116 YRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 609 RLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPRER-XTYLFSATLTK 785
RLV ++ G + +++ VMDEADR+ F + D IL LFSAT+
Sbjct: 176 RLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPS 233
Query: 786 KVXKL 800
+V +L
Sbjct: 234 RVEEL 238
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 96.3 bits (229), Expect = 5e-21
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Frame = +3
Query: 321 PVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYFALILTPTRELAFQISEQFEA 497
P+ G D+ A TGSGKT ++ +PI+Q L R +++ PTREL Q+++ FE
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 498 LGASIGVKCAVIVGGMDMVAQALMLSKKPH-----IIIATPGRLVDHLENTKGFNLRXLK 662
+ G++ G + + L+ + ++++TPGRLVDH+ N + F+L+ L+
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLR 287
Query: 663 YLVMDEADRILNMDFEVEVDKILRVI 740
Y+V+DEADR+L+ F+ VD ++ I
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 93.9 bits (223), Expect = 3e-20
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Frame = +3
Query: 225 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 404
++F+ + + L A +KK + +Q AIP+ L KD++ A TGSGKT A+ LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 405 QALLE---NPQRYFALILTPTRELAFQI--------SEQFEALGASIGVKCAVIVGGMDM 551
+ + ALI+ PTRELA QI + Q ++L + + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 552 VAQAL--MLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILNMDFEVEVDK 725
+ L K P ++I TPGRL + L + + L+ L++DEAD +++M F+ +
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQS 177
Query: 726 ILRVIPRERXTYLFSATLTKKV 791
I+ +P++R T LFSAT+ V
Sbjct: 178 IISQLPKQRRTGLFSATMNDTV 199
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 87.4 bits (207), Expect = 2e-18
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Frame = +3
Query: 357 AETGSGKTGAFALPILQALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVK 521
A+TG+GKT AF L + +L+ N + ++IL+PTRELA QI E+ L G++
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 522 CAVIVGGMDMVAQALMLSK-KPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEADRILN 698
+ +GG + + + + +++IATPGRL DHL+N + ++DEADR+++
Sbjct: 143 VSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD 202
Query: 699 MDFEVEVDKILRVIPRERXTYL-FSATLTKKVXKLQXGXI 815
M F + I + + L FSAT+ KV + G +
Sbjct: 203 MGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGIL 242
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 38.7 bits (86), Expect = 0.001
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Frame = +3
Query: 288 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 467
+K K Q +AI G +I T SGK+ + +PILQ+LLE+ Q A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS-TAFFVFPTKSL 368
Query: 468 A-FQISEQFEALGASIGVKCAVI--VGGMDMVAQALMLSKKPHIIIATPGRLVDHL---E 629
A Q + L +K + G + + + +II P L +
Sbjct: 369 AQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNA 428
Query: 630 NTKGFNLRXLKYLVMDEADRILNMDFEVEVDKILRVIPR 746
N + + LK V+DEA + N F V V +LR + R
Sbjct: 429 NRWYYFFKNLKLFVLDEA-HVYNGIFGVHVAFVLRRMRR 466
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.7 bits (71), Expect = 0.067
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Frame = +3
Query: 297 SKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALIL 449
++IQ P+A ++I+ A TG+GKT L IL L + N Q + + +
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 450 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGR--LVDH 623
P + L ++ F ++ A + G + Q + + II+ TP + ++
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTPEKWDIITR 637
Query: 624 LENTKGFNLRXLKYLVMDE 680
N + + ++ +++DE
Sbjct: 638 KANDLSY-VNLVRLVIIDE 655
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 32.7 bits (71), Expect = 0.067
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Frame = +3
Query: 333 LGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASI 512
L ++++ TG GKT A+ ++ L P+ Y + + PT+ L +++Q EA
Sbjct: 85 LFENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYI-VFMAPTKPL---VTQQMEACYKIT 140
Query: 513 GV---KCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDEA 683
G+ + A + G + + + + ++ TP +++ +++ R + LV+DEA
Sbjct: 141 GIPKSQTAELSGHVPVTTRNQYYQSR-NVFFVTPQTILNDIKHGICDRTR-ISCLVIDEA 198
Query: 684 DRILNMDFEVEVDKILRVIPRERXTYLFSATLTKKVXKLQ 803
R VEV +L + + SAT K+ +Q
Sbjct: 199 HRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEAIQ 238
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 300 KIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRYFALILTPTREL 467
K Q EAI L GKD+ L TG GK+ + LP A++E R L+++P L
Sbjct: 522 KNQLEAINGTLSGKDVFILMPTGGGKSLCYQLP---AVIEGGASRGVTLVISPLLSL 575
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 135 KESYGDETNQDSEVEQTPTENVTEDTEDD 221
+ES G T +SEV QTPT +V E+ ED+
Sbjct: 38 EESAGQSTGTESEVIQTPT-SVEENNEDE 65
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.9 bits (64), Expect = 0.47
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Frame = +3
Query: 237 DLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQAL 413
++ +D+LC L ++ ++IQ P+A ++++ A TG+GKT L +LQ +
Sbjct: 260 EISSMDILCRKTF-LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
Query: 414 ---------------LENPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGM 545
L+ + F ++ + P + LA ++ E+ A +G+K + G M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 546 DMVAQALMLSKKPHIIIATP 605
+ + + I++ TP
Sbjct: 379 QLTKTEI---AETQILVTTP 395
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 PQNNDNLEKMTADK-ESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVD 254
P +N +K A K E G+E + ++E ++ +E +E ED+ + + V+D
Sbjct: 350 PDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVID 403
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 29.5 bits (63), Expect = 0.63
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 4/220 (1%)
Frame = +3
Query: 150 DETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVA 329
D ++D++ TP + + +K KD E+ ++ ++++ + V
Sbjct: 450 DSNDEDAKAGTTPVKVAGRSEQSNK---KDTEFARTKSYR-EQREFLPAFAVREQLLSVI 505
Query: 330 LLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALI--LTPTRELAFQISEQF-EAL 500
+ +I + ETGSGKT A Q L E+ +I P R A ++++ E +
Sbjct: 506 RDNQVLIVVGETGSGKTTQLA----QFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEM 561
Query: 501 GASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXLKYLVMDE 680
G +G + D+ ++ T G L+ E+ NL ++MDE
Sbjct: 562 GVRLGSTVGYSIRFEDVTGPDTVIK------YMTDGVLL--RESLMQNNLEKYSVIIMDE 613
Query: 681 A-DRILNMDFEVEVDKILRVIPRERXTYLFSATLTKKVXK 797
A +R LN D + + + +V+ R R L + T K
Sbjct: 614 AHERSLNTD--ILMGLLKKVLSRRRDIKLLVTSATMNSQK 651
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.5 bits (58), Expect = 2.5
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 153 ETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKI--QKEAIPV 326
ET +S +E ENV D ED++I F + + V E + KP + QK+ +
Sbjct: 989 ETLTNSLMEDVGPENVDMDIEDNEI-FTNQSTMSVPSMLVENEESPKPDEYIDQKDKVQS 1047
Query: 327 ALL-GKDIIGL 356
LL GK +G+
Sbjct: 1048 PLLNGKSPVGV 1058
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 294 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAF 473
P + Q+E + + + + +A T SGKT + ++ +L + + + PT+ L
Sbjct: 736 PDEWQRETLDILDRDESVFVVAPTSSGKT-FISFYAMEKVLRDNDDGVVIYVAPTKALVN 794
Query: 474 QISEQFEA 497
Q+S + A
Sbjct: 795 QLSAEVYA 802
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 3.3
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Frame = +3
Query: 306 QKEAIPVALLGKDIIGLAETGSGKT--GAFALPILQALLENPQRYFALILTPTRELAFQI 479
QKEAI +G + A T +GKT +A+ + Q + A+ +P + L+ Q
Sbjct: 285 QKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTK-----AIYTSPIKALSNQK 339
Query: 480 SEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRXL 659
F+ +G ++ G + + + L I+ + R D +R +
Sbjct: 340 FRDFKHKFEDVG----ILTGDVQVNPEGSCLLMTTEILRSMLYRGAD--------LIRDV 387
Query: 660 KYLVMDEADRILNMDFEVEVDKILRVIPRERXTYLFSATL 779
++++ DE + +++ V ++++ ++P L SAT+
Sbjct: 388 EFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATV 427
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 LVFPLYWELHPPGHTLQISNTCFQYSRLFCIP--QNNDNLEKMTADKESYGDETNQDSEV 176
L PL + L P H+++ T + P +N T + + +DS
Sbjct: 896 LSVPLSFRLGPHMHSVKSFETESSFGNRSLSPKQENRRTYSDSTIESSLMPNVVREDSSS 955
Query: 177 EQ-TPTENVTEDTEDDKITFKDL 242
++ P + + D +K+TF DL
Sbjct: 956 DRLAPKKKIGRDYSKEKLTFNDL 978
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 135 KESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEE 278
KES G+++N EV + E +EDD+ T+++ L EA EE
Sbjct: 136 KESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEE--EASKLREAYEE 181
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 648 LRXLKYLVMDEADRILNMDFEVEVDKILRVIPRER 752
LR +L++DEA L+ + EV VDK ++ + R
Sbjct: 635 LRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNR 669
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 693 LNMDFEVEVDKILRVIPRERXTYLFSAT 776
LN+D+ + D + RVI TYLF+ T
Sbjct: 47 LNLDYNIVYDLLDRVISHVPCTYLFART 74
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -2
Query: 563 SLCHHVHTANYYCTFYTYACTKCFKLF*YLKCQFPCWSKY----KCKISLWVL-**CLKY 399
+L +H ++ N T T C KC+ L + C F C S + C + L V+ C K
Sbjct: 1235 TLVNHCNSCNS-TTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKE 1293
Query: 398 GQGKGTCLTRTC 363
G ++++C
Sbjct: 1294 WFSNGDSISQSC 1305
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 363 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 476
TGSGKT F I A P LIL +ELA Q
Sbjct: 55 TGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQ 92
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 81 RLFCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVTEDTEDDK 224
RL + N +LE + + DSE E + TE EDDK
Sbjct: 82 RLAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDK 129
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/95 (23%), Positives = 35/95 (36%)
Frame = +3
Query: 189 TENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 368
T+ + + EDD I K V + L E + +W I + A + + ++ L E
Sbjct: 68 TDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKL 127
Query: 369 SGKTGAFALPILQALLENPQRYFALILTPTRELAF 473
LP L LE P + +AF
Sbjct: 128 ENDRILMYLPHLDKSLEQPYNHLPYYHPAVAGIAF 162
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 640 PLVFSRWSTNLPGVAMIM*GFLDSIRAC 557
P VFS + NLPG A+ FLD+ + C
Sbjct: 345 PPVFSHYVMNLPGSAI---EFLDAFKGC 369
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 150 DETNQDSEVEQTPTE--NVTEDTEDDK 224
D TN D E+E+ TE N+T + E DK
Sbjct: 559 DGTNNDVEIEKNSTEIDNITFNDEADK 585
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +3
Query: 96 PQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVTEDTEDDK---ITFKDLGVVDVLCE 266
P N+ +EK A+ E+ T D ++ + P + E+++DDK +D+G + E
Sbjct: 497 PATNEEVEKNNANSENANGLT--DEKIIEAPLD-TKENSDDDKPSPAAAEDIGTNGAIEE 553
Query: 267 ACEELKWKKPSKIQKEAIPVALLGKD 344
+ + +P K + + L K+
Sbjct: 554 IPQVSEVLEPEKAHTTNLQLNALDKE 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,671,051
Number of Sequences: 5004
Number of extensions: 80117
Number of successful extensions: 352
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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