Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_B24
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 0.90
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.90
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 27 4.8
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 6.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 8.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 8.4
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 29.1 bits (62), Expect = 0.90
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 532 PPSPGDLGYINPIIKSP-XSIHQPPQT 609
PP PGD+ + NP++ P + QP +T
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSET 244
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.90
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 540 PWRSRLHQPDHQ-IPXFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTP 713
P S QP HQ FHTPT P T +S +P + + PLS +A S +P
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSSP 182
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Frame = +3
Query: 276 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 455
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 456 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPXFHTP--TTPDLTSISI 626
V +TP ++ ++ + +T P S + P TP TT TS S+
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 597
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Frame = +3
Query: 288 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 461
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 462 GVNVLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPXFHTP--TTPDLTSISI 626
V +TP ++ ++ + +T P S + P TP TT TS S+
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 538
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 276 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 446
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 447 DVTVEGVNVLATPSSS 494
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 515 RPYASSHPPLAISATSTRSSNPRXPYTNHPRLNIHFHQSPDAVLKGVRAGVKASVVIRGS 694
+P+ S+ PL I++ SS+P+ ++ L + P +K AG++ +GS
Sbjct: 88 KPFYSNKEPLKINSWKKSSSHPKSKEVSNGLLKV--STPPTEFVKRENAGIRRRSSNQGS 145
Query: 695 ISVSHPLV 718
++ P +
Sbjct: 146 FALEAPKI 153
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 523 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 404
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 371
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 339 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 769 IHHSLEIRGRXPLAMPSDEGVRYADGA 689
IHH++ +R + P+ P VR+ D A
Sbjct: 61 IHHAIIVRTKSPVRRPDGRYVRFDDNA 87
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 570 HQIPXFHTPTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSAYL 707
H P P+TP + SI+P TP Y + A L PLS + +AYL
Sbjct: 295 HCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYL 345
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 508 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 374
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 546 RSRLHQPDHQIPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 719
R L+ H P +P + + S+NP TP +P + PP+S+ +P P S
Sbjct: 248 RPSLNTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS 303
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Frame = +3
Query: 456 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPXFHTPTTPDLTSISINPL 635
+ NV TPS++ + ++ + H P + +P +HT D +SI+ +
Sbjct: 252 ISSTNVATTPSNTIFEMDDTLKADSSS----NEYHSPTNTLPSYHTEADLDNSSIASSNR 307
Query: 636 TPY*KE-FAPGLKPPLSSEAPSA--YLTPSSLGMAXGXRPLISS 758
T + ++ + + +S SA TPSS + +P +S+
Sbjct: 308 TQHTEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLST 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,467
Number of Sequences: 5004
Number of extensions: 61556
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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