Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_B09
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    29   0.82 
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   4.4  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   4.4  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   7.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   7.7  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 320 SSICANPGDRHIGRI*FCVHIINIHGRLKGCGLASI 427
           S + + P D HIG+  F   +IN+   + G G+ S+
Sbjct: 5   SPLSSGPADVHIGKAGFFSSVINLANTILGAGILSL 40


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 456 VGRGHVGTLCMLAKPHPLSLPWMLIIC 376
           V   +  +LC++A PH L+   +LI C
Sbjct: 163 VNDSYASSLCLMAHPHQLAYAALLISC 189


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 504 KDEDRSIADELSKRVRVLCWVMTQPSNHEKKAKHVKATWGKRCNKLLFMSSVEDSNLPSV 683
           KD  R   + + KR +      +      K A   K   G + NK   +S  ED  L + 
Sbjct: 25  KDYQRVKQNIVEKREKHALSTTSTKIKKRKDALSKKVKQGIKVNKGK-LSFGEDEELEND 83

Query: 684 KLPCKKVEITCGRRRKPPSDT 746
            LP KKVE      + P +DT
Sbjct: 84  DLPLKKVEKKMFMGKDPSADT 104


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 471 IVDHGSDEPAHKDEDRSIADELSKRVRVLCWVMTQPSNHEKKAKHV 608
           +V  GS+ P+     R++   L      +  V  +P+NH KK   V
Sbjct: 317 VVKDGSNSPSASKVCRTVLSMLGLFTEQVFSVADEPNNHRKKISQV 362


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 796 VVGFQEPVRLPPVMFVHVSEGGFRLRPQVISTFLHGSFTDG 674
           VVGFQE V+L P   +       R     +   L+G  T G
Sbjct: 592 VVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSG 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,620,468
Number of Sequences: 5004
Number of extensions: 78730
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)