Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_B07
(873 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.014
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.014
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.032
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.032
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.032
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 29 0.056
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.056
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.056
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.074
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 29 0.074
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.098
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 26 0.52
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 6.4
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 8.5
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 8.5
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 8.5
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.011
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 454
V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.1 bits (67), Expect = 0.014
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 454
V S+ +WRPD+VL NA A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
+ RLW+PDV++ N+A G Y V NNG+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.032
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.0 bits (52), Expect = 0.91
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 142 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 321
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 322 G 324
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.032
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.0 bits (52), Expect = 0.91
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 142 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 321
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 322 G 324
G
Sbjct: 124 G 124
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.9 bits (64), Expect = 0.032
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 323 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 454
G V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.042
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 29.1 bits (62), Expect = 0.056
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 350 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 457
+++W+PD+VL N A G+Y +R + + NG V W+
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 22.6 bits (46), Expect = 4.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.1 bits (62), Expect = 0.056
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 323 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 454
G T V SE +W PD+VL N A G+Y + +A + + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.1 bits (62), Expect = 0.056
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 317 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSW 454
E+G T L V SE +W PD+VL N A G + +A + G V W
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.7 bits (61), Expect = 0.074
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 454
V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.074
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSWI 457
V R+WRPD +L N A + VS+ G V W+
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.098
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 350 ERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDXGXPISMQXXNWPXE 514
ER+WRPD N + + R+S +G + + RL M+ N+P +
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMD 172
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 457
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 229 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 324
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 25.8 bits (54), Expect = 0.52
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +1
Query: 199 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 312
++ L ++H N+ E TV L++ W L+W +
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 6.4
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 232 IRESESTVRILADLQMNWIDKRLSWNAG 315
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 109 YKKLQYYNIINIEQIPVPV 127
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 57 YKSSTFYDN*SIEAIPTPV 1
YK +Y+ +IE IP PV
Sbjct: 105 YKKLQYYNIINIEQIPVPV 123
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,609
Number of Sequences: 438
Number of extensions: 5279
Number of successful extensions: 59
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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