Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_B03
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 37 0.11
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.59
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.59
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 34 0.59
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 34 0.59
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 34 0.59
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 34 0.59
L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine recep... 33 1.4
BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid... 33 1.4
BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid... 33 1.4
BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid... 33 1.4
BC022449-1|AAH22449.1| 474|Homo sapiens gamma-aminobutyric acid... 33 1.4
M59216-1|AAA35862.1| 474|Homo sapiens gamma-aminobutyric acid r... 32 2.4
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 32 3.2
S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2 sub... 32 3.2
S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2 sub... 32 3.2
S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A... 32 3.2
BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein. 32 3.2
BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein. 32 3.2
BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein. 32 3.2
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 32 3.2
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 31 4.2
X14767-1|CAA32875.1| 474|Homo sapiens GABA-A receptor beta 1 su... 31 4.2
BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein. 31 4.2
BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein. 31 4.2
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 31 4.2
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 31 4.2
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 31 4.2
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 30 9.6
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 30 9.6
AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repea... 30 9.6
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 36.7 bits (81), Expect = 0.11
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 12/183 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPV 430
+ L+ W D RL+WN+ R GV + A R + T V
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSR-----YEGVNILRIPAKRIWLPDIVLYNNDGTYEVSV 128
Query: 431 Y--LITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXX 595
Y LI + + L + +++ +P D Q CT KF S + E+D +
Sbjct: 129 YTNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPT 188
Query: 596 SSM 604
+SM
Sbjct: 189 ASM 191
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 34.3 bits (75), Expect = 0.59
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 11/182 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGT-TLSAP 427
+ L+ W D RL+WN+ R ++ + + N+ GT +S
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSRYEGVNILRIPAKRIWLPDIVL---YNNADGTYEVSVY 130
Query: 428 VYLITAPSPXIKRLD---IXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDKXXS 598
LI + + L + +++ +P D Q CT KF S + E+D + +
Sbjct: 131 TNLIVRSNGSVLWLPPAIYKSACKIEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTA 190
Query: 599 SM 604
SM
Sbjct: 191 SM 192
>L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine receptor
alpha-5-subunit protein.
Length = 462
Score = 33.1 bits (72), Expect = 1.4
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPPD--SKIV-VNLTLHLRHAN-IRESESTVRIQADLQMN 283
+N T + ++D LL YD P +I V +++ + ++E I + +
Sbjct: 44 DNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQS 103
Query: 284 WIDKRLSWNAG--RVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPX 457
W D+RL + R+ L +L + K+ H T
Sbjct: 104 WKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLY 163
Query: 458 IKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEM 571
RL I MQL+ +P D C KFGS + + E+
Sbjct: 164 TMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 33.1 bits (72), Expect = 1.4
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPPD--SKIV-VNLTLHLRHAN-IRESESTVRIQADLQMN 283
+N T + ++D LL YD P +I V +++ + ++E I + +
Sbjct: 44 DNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQS 103
Query: 284 WIDKRLSWNAG--RVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPX 457
W D+RL + R+ L +L + K+ H T
Sbjct: 104 WKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLY 163
Query: 458 IKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEM 571
RL I MQL+ +P D C KFGS + + E+
Sbjct: 164 TMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 33.1 bits (72), Expect = 1.4
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPPD--SKIV-VNLTLHLRHAN-IRESESTVRIQADLQMN 283
+N T + ++D LL YD P +I V +++ + ++E I + +
Sbjct: 44 DNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQS 103
Query: 284 WIDKRLSWNAG--RVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPX 457
W D+RL + R+ L +L + K+ H T
Sbjct: 104 WKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLY 163
Query: 458 IKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEM 571
RL I MQL+ +P D C KFGS + + E+
Sbjct: 164 TMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5, precursor protein.
Length = 462
Score = 33.1 bits (72), Expect = 1.4
Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 6/158 (3%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPPD--SKIV-VNLTLHLRHAN-IRESESTVRIQADLQMN 283
+N T + ++D LL YD P +I V +++ + ++E I + +
Sbjct: 44 DNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQS 103
Query: 284 WIDKRLSWNAG--RVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPX 457
W D+RL + R+ L +L + K+ H T
Sbjct: 104 WKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLY 163
Query: 458 IKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEM 571
RL I MQL+ +P D C KFGS + + E+
Sbjct: 164 TMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEV 201
>BC022449-1|AAH22449.1| 474|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, beta 1 protein.
Length = 474
Score = 33.1 bits (72), Expect = 1.4
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
C S E N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDY 82
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q +W DKRLS++ + L V L + G T+ +
Sbjct: 83 TLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLCVPDTYFLNDKKSFVHGVTVKNRMIR 142
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 143 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 191
>M59216-1|AAA35862.1| 474|Homo sapiens gamma-aminobutyric acid
receptor beta-1 subunit protein.
Length = 474
Score = 32.3 bits (70), Expect = 2.4
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
C S E N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDY 82
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q +W DKRLS++ + L V L + G T+ +
Sbjct: 83 TLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 142
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 143 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 191
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 31.9 bits (69), Expect = 3.2
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 304
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 305 WNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPXIKRLD---I 475
W+ + V T+V + + L V + +P I L
Sbjct: 92 WDPRDYEGLWVLRVPSTMVWRPDIVLENNVDGVFEVALYCNV--LVSPDGCIYWLPPAIF 149
Query: 476 XTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDK 589
+ S+ + +P D Q C+ F S+ + ++E+D + +
Sbjct: 150 RSACSISVTYFPFDWQNCSLIFQSQTYSTNEIDLQLSQ 187
>S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 474
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 512
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A
receptor beta 2 subunit protein.
Length = 474
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 31.9 bits (69), Expect = 3.2
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
CA S + N + + +D LL YD PD + V + + + + + E
Sbjct: 23 CA-QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDY 81
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q W DKRLS+N + L V L + G T+ +
Sbjct: 82 TLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 141
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 142 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 190
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 31.9 bits (69), Expect = 3.2
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 304
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 32 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 91
Query: 305 WNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPXIKRLD---I 475
W+ + V T+V + + L V + +P I L
Sbjct: 92 WDPRDYEGLWVLRVPSTMVWRPDIVLENNVDGVFEVALYCNV--LVSPDGCIYWLPPAIF 149
Query: 476 XTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDK 589
+ S+ + +P D Q C+ F S+ + ++E+D + +
Sbjct: 150 RSACSISVTYFPFDWQNCSLIFQSQTYSTNEIDLQLSQ 187
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 31.5 bits (68), Expect = 4.2
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Frame = +2
Query: 185 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNA---GRVGLQHLAGVLG 352
+ + V L L L + +++E E T+ ++ W D RL WNA G + + L +
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMV 108
Query: 353 TLVEA*RGTXKRGCNHRRGTTLSAPVY---LITAPSPXIKRLDIXTPISMQLDXWPNDMQ 523
L E G + + + + VY + P I R PIS + +P D Q
Sbjct: 109 WLPEIVLENNNDG-SFQISYSCNVLVYHYGFVYWLPPAIFRSS--CPIS--VTYFPFDWQ 163
Query: 524 TCTFKFGSRMHXSDEMDFAI 583
C+ KF S + + E+ ++
Sbjct: 164 NCSLKFSSLKYTAKEITLSL 183
>X14767-1|CAA32875.1| 474|Homo sapiens GABA-A receptor beta 1
subunit protein.
Length = 474
Score = 31.5 bits (68), Expect = 4.2
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 6/169 (3%)
Frame = +2
Query: 89 CAIASAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTV 256
C S E N + +D LL YD PD + V + + + + + E
Sbjct: 23 CCAHSTNEPSNMPYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDY 82
Query: 257 RIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYL 436
+ Q +W DKRLS++ + L V L + G T+ +
Sbjct: 83 TLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIR 142
Query: 437 ITAPSPXIKRLDIXTPIS--MQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ + L I T + M L +P D Q CT + S + +D+++F
Sbjct: 143 LHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEF 191
>BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 31.5 bits (68), Expect = 4.2
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGR 319
+ L+ W D RL+WN+ R
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSR 96
>BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 31.5 bits (68), Expect = 4.2
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIV-VNLTLHLRHA-NIRESES 250
A+ C A + ++D LL Y+ R + S+++ + L L L ++ E E
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 251 TVRIQADLQMNWIDKRLSWNAGR 319
+ L+ W D RL+WN+ R
Sbjct: 74 IMTTNVWLKQEWTDYRLTWNSSR 96
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 31.5 bits (68), Expect = 4.2
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Frame = +2
Query: 185 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNA---GRVGLQHLAGVLG 352
+ + V L L L + +++E E T+ ++ W D RL WNA G + + L +
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMV 108
Query: 353 TLVEA*RGTXKRGCNHRRGTTLSAPVY---LITAPSPXIKRLDIXTPISMQLDXWPNDMQ 523
L E G + + + + VY + P I R PIS + +P D Q
Sbjct: 109 WLPEIVLENNNDG-SFQISYSCNVLVYHYGFVYWLPPAIFRSS--CPIS--VTYFPFDWQ 163
Query: 524 TCTFKFGSRMHXSDEMDFAI 583
C+ KF S + + E+ ++
Sbjct: 164 NCSLKFSSLKYTAKEITLSL 183
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 31.5 bits (68), Expect = 4.2
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Frame = +2
Query: 185 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNA---GRVGLQHLAGVLG 352
+ + V L L L + +++E E T+ ++ W D RL WNA G + + L +
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMV 108
Query: 353 TLVEA*RGTXKRGCNHRRGTTLSAPVY---LITAPSPXIKRLDIXTPISMQLDXWPNDMQ 523
L E G + + + + VY + P I R PIS + +P D Q
Sbjct: 109 WLPEIVLENNNDG-SFQISYSCNVLVYHYGFVYWLPPAIFRSS--CPIS--VTYFPFDWQ 163
Query: 524 TCTFKFGSRMHXSDEMDFAI 583
C+ KF S + + E+ ++
Sbjct: 164 NCSLKFSSLKYTAKEITLSL 183
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 31.5 bits (68), Expect = 4.2
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Frame = +2
Query: 185 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNA---GRVGLQHLAGVLG 352
+ + V L L L + +++E E T+ ++ W D RL WNA G + + L +
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFGNISVLRLPPDMV 108
Query: 353 TLVEA*RGTXKRGCNHRRGTTLSAPVY---LITAPSPXIKRLDIXTPISMQLDXWPNDMQ 523
L E G + + + + VY + P I R PIS + +P D Q
Sbjct: 109 WLPEIVLENNNDG-SFQISYSCNVLVYHYGFVYWLPPAIFRSS--CPIS--VTYFPFDWQ 163
Query: 524 TCTFKFGSRMHXSDEMDFAI 583
C+ KF S + + E+ ++
Sbjct: 164 NCSLKFSSLKYTAKEITLSL 183
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 30.3 bits (65), Expect = 9.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 461 KRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAIDK 589
K + + + ++ + +P D Q CTF F S ++ D M +DK
Sbjct: 154 KPMRVTSICNLDIFYFPFDQQNCTFTFSSFLYTVDSMLLGMDK 196
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKI--VVNLTLHLRHANI---RESESTVRIQADLQMNWIDKRLS 304
++ L+ YD + P + VVN++L L N+ E E + ++M W D RL
Sbjct: 29 LLADLMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLR 88
Query: 305 WN 310
W+
Sbjct: 89 WD 90
>AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repeat,
tropomodulin and proline-rich containing protein
protein.
Length = 1475
Score = 30.3 bits (65), Expect = 9.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 284 WIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGC 394
W+ R W AGR GL AGV +L RGC
Sbjct: 432 WMTGRADWRAGRGGLGPPAGVANSLPPQLFAAVSRGC 468
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,487,064
Number of Sequences: 237096
Number of extensions: 2120726
Number of successful extensions: 5057
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 4643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5056
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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