Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_B03
(880 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 2e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 34 0.002
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 32 0.008
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 32 0.008
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.099
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 28 0.099
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 28 0.099
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.30
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.40
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.40
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 26 0.53
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.70
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.5
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.0 bits (99), Expect = 2e-06
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPX--- 457
+D+RL++ G+ L +L + + T H T+++P +
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKP--DTYFYNGKHSYLHTITSPNKFVRLYQDGRVL 119
Query: 458 -IKRLDIXTPISMQLDXWPNDMQTCTFKFGS 547
RL I M L+ +P D Q C +FGS
Sbjct: 120 YSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNA 313
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 33.9 bits (74), Expect = 0.002
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN--AGRVGLQHLAGVLGT-LVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPXIK-- 463
L +N GR+ L + + K G H + VY+ P+ +
Sbjct: 95 LRFNDFGGRLKYLTLTDASRVWMPDLFFSNEKEGHFH---NIIMPNVYIRIFPNGSVLYS 151
Query: 464 -RLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
R+ + M L +P D Q C+ + S +D++ F
Sbjct: 152 IRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVF 190
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 31.9 bits (69), Expect = 0.008
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 506 WPNDMQTCTFKFGSRMHXSDEMDFAIDK 589
WP D C FGS +H +E++ +DK
Sbjct: 176 WPYDTHRCRINFGSWVHSGEEVNIFLDK 203
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 31.9 bits (69), Expect = 0.008
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRG-TTLSAPV 430
+ L+ W D + W+ G V + + G TT++ +
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 431 YLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMD 574
T + + + +P D QTC KFGS + ++D
Sbjct: 127 LHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
Score = 26.2 bits (55), Expect = 0.40
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLXN 386
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.099
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + M + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 28.3 bits (60), Expect = 0.099
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 464 RLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAID 586
+L + +M +P+D Q C + S H +DEM F D
Sbjct: 156 KLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 28.3 bits (60), Expect = 0.099
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 488 SMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
++ + +P D QTC KFGS D++ A+
Sbjct: 152 TIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL 183
Score = 23.0 bits (47), Expect = 3.7
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +3
Query: 351 ERLWRPDVVLXN 386
+++W+PD+VL N
Sbjct: 106 DKVWKPDIVLFN 117
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + M + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + + + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + + + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.1 bits (57), Expect = 0.23
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPS 451
++ +W D +L W+ G + V + + TL+ L
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 452 PXIKRLDIX-TPISMQLDXWPNDMQTCTFKFGSRMHXSDEMD 574
K I + + ++ +P D QTC KFGS + ++D
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.23
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLXN 386
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
Score = 25.4 bits (53), Expect = 0.70
Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 8/162 (4%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSA 424
T + ++ W D +L WN G V + + T+
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 123
Query: 425 PVYLITAPSPXIKRLDIXTPI-SMQLDXWPNDMQTCTFKFGS 547
L K I + ++ +P D QTC KFGS
Sbjct: 124 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGS 165
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.30
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + + + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.30
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRV-GLQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G++ L L +
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT ++ V + + + + +P D Q C KFGS + +++D +
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 63 ITPNKLWKPDILMYN 77
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 26.6 bits (56), Expect = 0.30
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 488 SMQLDXWPNDMQTCTFKFGSRMHXSDEMD 574
S+ ++ +P D+QTC K GS + ++D
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 25.8 bits (54), Expect = 0.53
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 491 MQLDXWPNDMQTCTFKFGSRMHXSDEMD 574
+ ++ +P D QTC KFGS + ++D
Sbjct: 155 IDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.40
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG-LQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G ++ L L +
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT + V + + + + +P D Q C KFGS + +++D +
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.40
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGRVG-LQHLAGVLGTLVEA*RGTXKRGCNHRR 406
++ E + A L++ W+D L WN G ++ L L +
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 407 GTTLSAPVYLITAPSPXIKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
GT + V + + + + +P D Q C KFGS + +++D +
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 22.6 bits (46), Expect = 4.9
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
++ +LW+PD+++ N
Sbjct: 131 ITPNKLWKPDILMYN 145
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +2
Query: 458 IKRLDIXTPISMQLDXWPNDMQTCTFKFGSRMHXSDEMDF 577
+ +L + +M+ + +P+D Q C+ S H + ++ F
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVF 162
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.70
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 298
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 299 LSWNAGRVGLQHLAGVLGTLVEA*RGTXKRGCNHRRGTTLSAPVYLITAPSPXIKRLDIX 478
L WN G + V + + TL L K I
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKPPAIY 154
Query: 479 -TPISMQLDXWPNDMQTCTFKFGSRMHXSDEMD 574
+ + ++ +P D Q+C KFGS + ++D
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
Score = 25.4 bits (53), Expect = 0.70
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLXN 386
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSERLWRPDVVLXN 386
+ RLW+PDV++ N
Sbjct: 100 IPPHRLWKPDVLMYN 114
Score = 23.0 bits (47), Expect = 3.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 491 MQLDXWPNDMQTCTFKFGSRMHXSDEMDFAI 583
+ + +P D Q C KFGS + ++D +
Sbjct: 150 IDITWFPFDDQRCEMKFGSWTYDGFQLDLQL 180
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 457 HKALGHXHSNFYAVRQXAQRHA 522
H +GH HS+ +A HA
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHA 437
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 351 ERLWRPDVVLXN 386
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,422
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 57
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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