Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_B02
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.5  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   4.7  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   6.2  
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541...    28   8.2  
08_02_0813 + 21459776-21461128                                         28   8.2  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.2  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.2  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 398 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 550
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 429 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLCSNSVVCRSNS 280
           T + S    GGCS    +   PP AFRG+  +   P+    + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 296 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 117
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 116 RILPH 102
            I PH
Sbjct: 65  EIYPH 69


>08_02_1498 +
           27553449-27553730,27553834-27553946,27554063-27554129,
           27554310-27554402,27554516-27554659,27554860-27554954,
           27555120-27555412,27555514-27555632,27555742-27556094,
           27556177-27556286,27556403-27556512,27556802-27557671
          Length = 882

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 311 HRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGT 412
           H   G  A+ W P      LTWY   R  PP GT
Sbjct: 640 HSEQGMGAVAWKPGKDNQPLTWYR-RRFDPPSGT 672


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 313 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 492
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 493 QL 498
           +L
Sbjct: 289 EL 290


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 GRGERSPRRWLQPRLAVPRQASTSVPRTP 341
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 310 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 489
           T G   CS++L    R+W     +++   +      LRA   +N S +    +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187

Query: 490 MQLDN 504
             LDN
Sbjct: 188 --LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,437,573
Number of Sequences: 37544
Number of extensions: 561333
Number of successful extensions: 1768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)