Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P24
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    30   0.36 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.3  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.3  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.6  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 648 YTNHPRLNIHFHQSPDAVLEGVRAGVKPPLSSEAPSAYLTPSSLGMAKGVSPPY-FQVND 472
           + N P   + F      ++ GV     PP SS+ P  Y+       AKG+S  Y   VND
Sbjct: 14  WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 725  SPLCIKPPXPCDXGYIXPDHQIPRFHTPTTPDLTSISINPLTP 597
            +P  I PP P       P  + P+ H P+ P    +S +P  P
Sbjct: 965  APPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 254 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 159
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -3

Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 174
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 173 LSASIQASLPSSEIYRQL 120
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
 Frame = -2

Query: 654 IPYT--NHPRLNIHFHQSPDAVLEGVRAGV--KPPLSSEAPSAYLTPS 523
           +PYT  NHP+ +I FH   + V + ++A +  KP ++S+A +A +  S
Sbjct: 27  LPYTARNHPQFSIWFHNDFEPV-KDLKALLKDKPQIASQAVTALVNVS 73


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 467 DSSFT*K*GGETPLAMPSDEGVRYADGASDDNGGFTPARTPSS 595
           +SSF    G  TPL    D G  YAD A+  N    PA TP +
Sbjct: 160 NSSFVGNSGSGTPL--DGDSGSFYADSANLTNREPYPAWTPEN 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,358
Number of Sequences: 5004
Number of extensions: 59810
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)