Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P24
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    29   3.5  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.6  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   6.1  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   6.1  
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888...    29   6.1  
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873...    28   8.1  
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89...    28   8.1  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -3

Query: 704 PXPCDXGYIXPDHQIPRFHTPTTPDLTSISINPLTPY*KEFAPG*SLRCHQRLHQRISPP 525
           P P   G++   H +P FH P          N L P  K   PG S   H+ + +  +  
Sbjct: 694 PSPVANGFVPMQHGVPGFHPPVHQFSAPPMFN-LRPQMKLNQPGVSYPMHESVDRFSTHM 752

Query: 524 RHWAW 510
           R + W
Sbjct: 753 RPFGW 757


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 80  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 72  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 239  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 59   ILHSF 45
            +LHSF
Sbjct: 1408 LLHSF 1412


>01_06_1790 -
           39888313-39888350,39888437-39888530,39888612-39888836,
           39888944-39889018,39889144-39889212,39889319-39889384,
           39889492-39889713,39889794-39890681,39890973-39891053,
           39892546-39892598,39893010-39893088,39893218-39893319
          Length = 663

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 717 MHQATLPLRXRXHQXXSSNPPIPYTNHPR 631
           MHQ+  PL+       +S  P+PY N P+
Sbjct: 546 MHQSCSPLQSSHFPLETSGAPLPYINQPQ 574


>06_01_1069 +
           8731567-8731632,8732120-8732281,8733028-8733081,
           8733557-8733630,8733706-8733786,8734902-8735079,
           8735336-8735506,8736113-8736202,8736284-8736331,
           8736447-8736562,8736655-8736733,8737101-8737223
          Length = 413

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 612 QSPDAVLEGVRAGVKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLISG 442
           Q+P    E      +PP++S  P+A  TP++   A   +  Y Q      AS L+SG
Sbjct: 111 QAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQA-----ASNLVSG 162


>02_01_0121 +
           890391-890429,890565-890730,891209-891769,892365-892845,
           892952-893033,893818-894021
          Length = 510

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 627 NIHFHQSPDAVLEGVRAGVKPPLSSEAPSAY 535
           N  FH+   A    V A + PP S  APS +
Sbjct: 127 NFEFHKERGASARSVTAAIVPPFSKPAPSKW 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,822
Number of Sequences: 37544
Number of extensions: 453491
Number of successful extensions: 1264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)