Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P22
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          121   6e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   116   2e-26
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.6  
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    29   3.5  
02_04_0073 - 19471254-19472681                                         29   4.6  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   8.1  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  121 bits (292), Expect = 6e-28
 Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
 Frame = -1

Query: 617 PGGHFGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKV 438
           PGGH GRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V
Sbjct: 247 PGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSV 306

Query: 437 LRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 261
           ++  NK V R  ++ NPL N  A+LKLNPY    ++ A L E  R K  K   D++++ L
Sbjct: 307 VKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  116 bits (280), Expect = 2e-26
 Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = -1

Query: 617 PGGHFGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKV 438
           PGGH GRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V
Sbjct: 246 PGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSV 305

Query: 437 LRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 261
           ++  NK V     + NPL N  A+LKLNPY    ++ A L E  R K      D++++ L
Sbjct: 306 VKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKL 365

Query: 260 KLSKRNPAMKAEK 222
              + +    A K
Sbjct: 366 SPEESSKIKAAGK 378


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 354 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 443
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -1

Query: 539 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 372
           K P+KQ K    PQ +++  D +R   + K  + +  L A +     + + K  P   + 
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468

Query: 371 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 204
           A LK       +++   L L R+K L     A+ +     +    +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 580 SPHSAGLTPYSGHGRHHRNKR 518
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 611 GHFGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 480
           G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 675 GCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,492
Number of Sequences: 37544
Number of extensions: 315505
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)