Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P21
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 112 5e-26
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 65 1e-11
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 32 0.083
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.1
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 4.1
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 4.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.4
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 9.5
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 9.5
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 112 bits (270), Expect = 5e-26
Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Frame = -1
Query: 697 DPARFGKPVVVIDDCQFXP-VR--EAEQVRN*TFPSPSYHRTGEFELMRYRTTKDISLPF 527
+P+ V+++DCQF VR E E TF P GE ELM YR+ ++I++PF
Sbjct: 245 NPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPD----GEVELMSYRSHENINIPF 300
Query: 526 RVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKAS 347
R++P+V ++ + K+ ++ +++++ P L + +IP P N +GKA Y+ S
Sbjct: 301 RIVPIVEQLSKQKIIYRISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPS 359
Query: 346 ENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRY 179
EN I WKI R G E AE+EL T ++ W +PPIS+ F + F SG V+Y
Sbjct: 360 ENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQY 416
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 177 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 85
L+V EP + S + IKWVRY R+G E R
Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 65.3 bits (152), Expect = 1e-11
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Frame = -1
Query: 580 GEFELMRYRTTKDISLPFRVIPLVREV-GRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPL 404
GEF+LM YR + ++ P + V +++E V K+ FK + +++ IP P
Sbjct: 260 GEFDLMSYRMSSNVR-PLIWVECESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPE 318
Query: 403 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPI 230
+ + G +Y + A+VW IK+ AG KE + AE+ L ++ + + + P+
Sbjct: 319 DADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPV 378
Query: 229 SMGFEVP-FAPSGFKVRY 179
+ F +P F SG +VRY
Sbjct: 379 QLKFAIPYFTTSGIQVRY 396
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 177 LKVFEPKLNYSDHDVIKWVRYIGRSG 100
LK+ EPKLNY + WVRY+ ++G
Sbjct: 397 LKITEPKLNY---HAMPWVRYVTQNG 419
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 32.3 bits (70), Expect = 0.083
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = -1
Query: 673 VVVIDDCQFXPVREAE-QVRN*TFPSPSYHRTGEFELMRYRTTKDISLPFRVI----PLV 509
V+ +DD Q R ++ + TF HR EF+++ Y KD +P +I ++
Sbjct: 240 VLYVDDAQVAKSRISQTDTWDETFIF-DVHRAKEFQIIIYEKKKDFDIPIALILIPTTII 298
Query: 508 REVGRTKMEVKVVLKSNFKPSL 443
E R K ++ + ++++KPS+
Sbjct: 299 AEELRRKRNIQEMSETSWKPSI 320
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 322 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 179
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 451 PSLLGQKIEVKIPTPLNTSGVQLICLK 371
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 604 PSPSYHRTGEFELMRYRTTKD 542
PSPS++R+G + R TTKD
Sbjct: 111 PSPSFYRSGSQKRARNLTTKD 131
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 393 PLVFSGVGIFTSIFCPSREGLKLLF 467
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 134 SSSGCATSDAPDSTRPGA----ERRGVEWLRESQRVRIFEKYNKK 12
+ GC + + DS+ PG+ + E RE Q+ EKY+ K
Sbjct: 2 ADKGCEAAQSKDSSAPGSGEPRPKTEKELERERQKAAKLEKYHAK 46
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 415 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 257
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,223
Number of Sequences: 5004
Number of extensions: 65485
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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