Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P21
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 142 4e-34
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 75 7e-14
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 73 2e-13
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 37 0.021
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 37 0.021
01_06_0888 + 32738275-32739567 31 1.4
09_04_0194 + 15504780-15506114 29 5.7
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135 29 5.7
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 9.9
07_03_0190 + 14893243-14893582,14893684-14893808 28 9.9
06_01_0917 - 7077934-7080339 28 9.9
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 28 9.9
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 142 bits (343), Expect = 4e-34
Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Frame = -1
Query: 700 SDPARFGKPVVVIDDCQFXP---VREAEQVRN*TFPSPSYHRTGEFELMRYRTTKDISLP 530
S PA+ GK + +DD F + + +F P GEFELM+YR T+ ++LP
Sbjct: 237 SRPAKSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPD----GEFELMKYRITEGVNLP 291
Query: 529 FRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKA 350
FRV+P ++E+GRT+ME+ V +KS F + + VK+P P T+ GKAKY A
Sbjct: 292 FRVLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNA 351
Query: 349 SENAIVWKIKRMAGMKETQLSAEIELLET-DTKKKWTRPPISMGFEVP-FAPSGFKVRY 179
S +++VWKI++ G E +SAE+EL+ T KK W RPPI M F+VP F SG +VR+
Sbjct: 352 SIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRF 410
Score = 35.1 bits (77), Expect = 0.066
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 189 RSAILKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 82
R LKV+E S ++ ++WVRYI R+G YE RC
Sbjct: 407 RVRFLKVWEK----SGYNTVEWVRYITRAGSYEIRC 438
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 74.9 bits (176), Expect = 7e-14
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = -1
Query: 580 GEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLN 401
G F+LM YR + + V V + R+++++ V +S FK +E+++P P +
Sbjct: 239 GSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPED 298
Query: 400 TSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPIS 227
++ + G A Y +A+VWKIK G KE AE L + ++ + PI
Sbjct: 299 STNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIR 358
Query: 226 MGFEVP-FAPSGFKVRY 179
+ FE+P F SG +VRY
Sbjct: 359 VKFEIPYFTVSGIQVRY 375
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Frame = -1
Query: 580 GEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLN 401
G F+LM YR + + V + + R+++E+ V +S FK +E+++P P +
Sbjct: 264 GSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSD 323
Query: 400 TSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPIS 227
+ + G A Y +A+VWK+K G K+ AE L + + + PI
Sbjct: 324 ATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIR 383
Query: 226 MGFEVP-FAPSGFKVRY 179
+ FE+P F SG +VRY
Sbjct: 384 VKFEIPYFTVSGIQVRY 400
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 682 GKPVVVIDDCQFXPVREAEQVRN*TFP-SPSYHRT---GEFELMRYRTTKDISLPFRVIP 515
G V++DDC F E V +F + H GEF +M YR T++ PFRV
Sbjct: 250 GGGAVILDDCNFH-----ESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPFRVTA 304
Query: 514 LVREVGRTKM 485
L+ E G +++
Sbjct: 305 LIEEAGPSRI 314
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 36.7 bits (81), Expect = 0.021
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 5/172 (2%)
Frame = -1
Query: 685 FGKPVVVIDDCQFXPV---REAEQVRN*TFPSPSYHRTGEFELMRYRTTKDISLPFRVIP 515
F P + I+D +F P R E + +F P G+FELM YR K + P V P
Sbjct: 230 FSNPTI-INDVRFHPCVRFRPWESNQILSFVPPD----GQFELMSYRVKKLKTTPIYVKP 284
Query: 514 -LVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENA 338
L + G ++ V V +K++ P I V+ P + L G A +
Sbjct: 285 QLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTC 342
Query: 337 IVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKV 185
W I ++ K LS + L E T T P + F++ A SG ++
Sbjct: 343 F-WTIGQIPKDKAPSLSGNLRLEEGLTHLH-TFPTFEVKFKIMGVALSGLQI 392
>01_06_0888 + 32738275-32739567
Length = 430
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 335 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFDLL 436
D+V+R R P N++H AGV R W H + L
Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLERL 45
>09_04_0194 + 15504780-15506114
Length = 444
Score = 28.7 bits (61), Expect = 5.7
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = +1
Query: 367 SPSSKSVAPRWCSAELESSLRSSVRAGRA*SYSSAQP*LPSWCGPPPARAG*RETAEICL 546
SP S + R C+ E+++ SSV G + + LP+ P R G TA L
Sbjct: 123 SPPSPACLNRTCTGHAENTVTSSVGRGNVVTDVLS---LPTTFPSAPVRQGPLATAPAFL 179
Query: 547 LWC-DTS*AQTLRSGGMKEMEMFSFELAQLHALXGT 651
C TS Q L +G + LA L GT
Sbjct: 180 FTCGPTSLTQGLAAGAAGMASLSRARLALPAQLAGT 215
>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
Length = 485
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 220 TPWRWAGASTSSWCRSRGAQSR 285
TP A STS WCRSRG R
Sbjct: 377 TPISSAQQSTSIWCRSRGGNRR 398
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 395 AGVQR--SWNLHFDLLSEQGGLEVTLQHNLDFHLG 493
A +QR WNL F SEQG + L H +D LG
Sbjct: 214 AAMQRVTQWNLDFTEHSEQGDRYMELAHRVDEALG 248
>07_03_0190 + 14893243-14893582,14893684-14893808
Length = 154
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 314 GGHEGDPAVCRD*APRD-RHQEEVDAPAHLHGVRSSLCTLRIQGP 183
GG P + R PRD R +DAP+ R++ CT R + P
Sbjct: 55 GGPRRWPGLSRTSPPRDLRRSGLIDAPSTTSTTRTARCTSRSEPP 99
>06_01_0917 - 7077934-7080339
Length = 801
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 HARHAFDLPHDSVLRGFILRFPLQANQL 388
H LP D++LRG + RFP +A L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 27.9 bits (59), Expect = 9.9
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Frame = -1
Query: 604 PSPSYHRTGEFELMR-----YRTTKDISLPFRVIPL-VREVGRTKMEVKVVLKSNFKPSL 443
PS S ++ FEL YR+ ++IS ++P + +G E+ V+ F P +
Sbjct: 523 PSSSGNQQSVFELRMLEESWYRSPEEISQLKGILPSNIYSLGVLLFEISVIA---FCPQI 579
Query: 442 LGQKIEVKIPTPLNTS-GVQLICLKGKAKYKASEN----------AIVWKIKRMAGMKET 296
QK+ K+ + S + ++ L+ K + N + ++K M
Sbjct: 580 FFQKVLKKLVSVFGYSIQIPVLGLRQDNKTPVAVNEEDTESGLLLGFLSQLKEEKEMHAA 639
Query: 295 QLSAEIELLETDTKKKWTRPPISMGFEV 212
+LSA++ LETD + R + MGF +
Sbjct: 640 KLSADLASLETDIAEVEKRHSMRMGFSL 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,998,035
Number of Sequences: 37544
Number of extensions: 512049
Number of successful extensions: 1494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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