Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P21
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 320 FDLPHDSVLRGFILRFPLQANQLHP 394
           FD   D+ LRG ++R   QANQ  P
Sbjct: 555 FDPEEDAPLRGDLVRILKQANQSVP 579


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 538 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 392
           SLP+     +  +   +M +   + S +     G+KI++  P  LN  G
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLG 365


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 538 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSG 392
           SLP+     +  +   +M +   + S +     G+KI++  P  LN  G
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLG 365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 367 SPSSKSVAPRWCSAELESSLRSSVRAGRA*SYSSAQP*LPSWCGPP 504
           S SS   A    S +++    S V A    +Y +    LP WC PP
Sbjct: 449 SSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTL---LPQWCLPP 491


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 18/82 (21%), Positives = 32/82 (39%)
 Frame = -1

Query: 796 SGMPRVQVWDQ**XRDXSPGXXEMEAYRVTRXSDPARFGKPVVVIDDCQFXPVREAEQVR 617
           +G+ R + W      + +      + Y +T  S P+    P V ID+ Q   +     V 
Sbjct: 354 TGLERSRSWSSLDNTNTNDQDYSSQNY-LTVHSFPSTLNIPSVKIDEDQKCSIESITSVN 412

Query: 616 N*TFPSPSYHRTGEFELMRYRT 551
           + + P P   R    +L  + T
Sbjct: 413 STSSPKPFPRRATLAQLHNFTT 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,409
Number of Sequences: 438
Number of extensions: 4723
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)