Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P19
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    29   0.55 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.9  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.0  

>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 567 VLSQSLCVLNIWIKPAFAPFAPREVSVLAELALGHLRYSLTDV--PPQSNSP 716
           VL+ S C++ + +KP       RE+ +L  LA G    SL D+   P+S +P
Sbjct: 63  VLNNSKCIIKV-LKPVKYKKIKREIKILQNLAGGPNIISLLDIVRDPESKTP 113


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 316 AIVILLSXERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEAS 182
           A+V+    E  +SF  L + +  A G +K+P A + L  S+ E S
Sbjct: 145 AVVLKGGTESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 244 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 119
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,635
Number of Sequences: 5004
Number of extensions: 59872
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)