Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P19
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 733 SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGAKGAKAGLI 602
           +  LPG    F+    SVKE RR   A  ++ +  RGA    A +I
Sbjct: 300 TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVI 345


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 733 SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGAKGAKAGLI 602
           +  LPG    F+    SVKE RR   A  ++ +  RGA    A +I
Sbjct: 11  TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVI 56


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 259 ALGRAAGGAKLPSAGLCLNASKAEASL 179
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 259 ALGRAAGGAKLPSAGLCLNASKAEASL 179
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 259 ALGRAAGGAKLPSAGLCLNASKAEASL 179
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 259 ALGRAAGGAKLPSAGLCLNASKAEASL 179
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 323 CRCDSNTAQXREEPQFRTFGSCTRPSGRWCEA 228
           C C     + R +P FR   S    SGR+  A
Sbjct: 406 CACCPGRVRRRYQPAFRCKPSQRFASGRYYSA 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,223
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)