Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P17
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.6  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   4.6  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    28   8.1  
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757     28   8.1  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 81  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 73  FYVDSKGVGKNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = -3

Query: 706  PPFPGISXTS-TXSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKLPLSSEAPSAY 536
            P  P  S TS + S     ++PT+P    TS   +P +P     +P          PS  
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820

Query: 535  LTPSSLGMXKGVSPPY 488
             +PSS       SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836


>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
          Length = 397

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 706 PPFPGISXTSTXSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKLPLSSEAPSAYLTP 527
           PP P  S TS  S+      PTT   +S + +   P   + AP   L     A +   TP
Sbjct: 139 PPPPSSSATSAASNTSAGVAPTTTTTSSPAPSYSRPAPHDAAPYQALYGGPYAAATARTP 198

Query: 526 SSLGMXKGVSPPYFQVN 476
           ++      VSP + Q++
Sbjct: 199 AAAAYHAQVSPFHLQLD 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,745
Number of Sequences: 37544
Number of extensions: 405961
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)