Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P16
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   202   6e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   202   6e-53
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    30   0.47 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  202 bits (492), Expect = 6e-53
 Identities = 96/155 (61%), Positives = 114/155 (73%)
 Frame = -2

Query: 577 PVRHTKXXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKEGKVIK 398
           P +  +  RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   K      
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK------ 292

Query: 397 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 218
            NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351

Query: 217 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
           E ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = -3

Query: 738 GTIEDKVKWARGHXEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSXHTKKLPP*DTPR 559
           G++ DKV+WAR H EK + + S F Q+EMID IGVT+G+  +       TK+LP   T R
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR-KTHR 244

Query: 558 XLGKLPAL 535
            L K+  +
Sbjct: 245 GLRKVACI 252



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = -1

Query: 815 VIAHTQMKXLXXGQKKAHIMEIQXXGVPSRTK*NGPEDXWRNLSLSILCLPKMK*LTALV 636
           V+AHTQ++     QKKAH+MEIQ  G     K     + +           + + +  + 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 635 SPKGKGYKGVTSRXTQRSYPRKTHQG 558
             +GKG +G T+R   +  PRKTH+G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  202 bits (492), Expect = 6e-53
 Identities = 96/155 (61%), Positives = 114/155 (73%)
 Frame = -2

Query: 577 PVRHTKXXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKEGKVIK 398
           P +  +  RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   K      
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK------ 292

Query: 397 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 218
            NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351

Query: 217 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 113
           E ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = -3

Query: 738 GTIEDKVKWARGHXEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSXHTKKLPP*DTPR 559
           G++ DKV+WAR H EK + + S F Q+EMID IGVT+G+  +       TK+LP   T R
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR-KTHR 244

Query: 558 XLGKLPAL 535
            L K+  +
Sbjct: 245 GLRKVACI 252



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = -1

Query: 815 VIAHTQMKXLXXGQKKAHIMEIQXXGVPSRTK*NGPEDXWRNLSLSILCLPKMK*LTALV 636
           V+AHTQ++     QKKAH+MEIQ  G     K     + +           + + +  + 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 635 SPKGKGYKGVTSRXTQRSYPRKTHQG 558
             +GKG +G T+R   +  PRKTH+G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 404 NFALLFVDSLSNTIDFLVHFSTVMITFLTSTSY 502
           NFALL+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 371 QIILSRCIVFNNFALLFVDSLSNTIDFLVHFSTVMITFLTS 493
           ++ L RC++   F LLF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 201 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 88
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,017
Number of Sequences: 5004
Number of extensions: 71806
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)