Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P16
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 215 3e-56
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 208 4e-54
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.6
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.5
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 6.1
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 29 6.1
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 8.0
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 215 bits (526), Expect = 3e-56
Identities = 101/153 (66%), Positives = 119/153 (77%)
Frame = -2
Query: 577 PVRHTKXXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKEGKVIK 398
P + + RKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 397 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 218
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 217 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 119
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/68 (44%), Positives = 39/68 (57%)
Frame = -3
Query: 738 GTIEDKVKWARGHXEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSXHTKKLPP*DTPR 559
GTI DKV + EK IPVD+VF +DEMID IGVT+G+ + +LP T R
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR-KTHR 247
Query: 558 XLGKLPAL 535
L K+ +
Sbjct: 248 GLRKVACI 255
Score = 48.0 bits (109), Expect = 9e-06
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = -1
Query: 815 VIAHTQMKXLXX-GQKKAHIMEIQXXGVPSRTK*N-GPEDXWRNLSLSILCLPKMK*LTA 642
VI HTQ++ + QKKAH+MEIQ G K + G + + + + + K + +
Sbjct: 162 VIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDI 220
Query: 641 LVSPKGKGYKGVTSRXTQRSYPRKTHQG 558
+ KGKGY+GV +R PRKTH+G
Sbjct: 221 IGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 208 bits (508), Expect = 4e-54
Identities = 97/145 (66%), Positives = 115/145 (79%)
Frame = -2
Query: 577 PVRHTKXXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKEGKVIK 398
P + + RKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 397 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 218
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 217 EKINLKFIDTSSKFGHGRFQTPADK 143
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/68 (44%), Positives = 39/68 (57%)
Frame = -3
Query: 738 GTIEDKVKWARGHXEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFSXHTKKLPP*DTPR 559
GTI DKV + EK IPVD+VF +DEMID IGVT+G+ + +LP T R
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR-KTHR 247
Query: 558 XLGKLPAL 535
L K+ +
Sbjct: 248 GLRKVACI 255
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = -1
Query: 815 VIAHTQMKXLXX-GQKKAHIMEIQXXGVPSRTK*N-GPEDXWRNLSLSILCLPKMK*LTA 642
VIAHTQ++ + QKKAH+MEIQ G K + G + + + + + K + +
Sbjct: 162 VIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDI 220
Query: 641 LVSPKGKGYKGVTSRXTQRSYPRKTHQG 558
+ KGKGY+GV +R PRKTH+G
Sbjct: 221 IGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 183 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 40
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 376 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 281
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 168 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 40
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 652 D*LHWCHPRAKDTKVSLLVAHKEATPVRHTKXXRKVACIGAWHPSRVSFTVAR 494
D L +PR + ++VS AT R +K R GAW+P SFT+ R
Sbjct: 565 DGLQCAYPRRRSSRVS-------ATS-RRSKPRRSSVSAGAWNPRSPSFTIKR 609
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 3 FFFFFFALSNVYFHGLHLRL 62
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,507,780
Number of Sequences: 37544
Number of extensions: 515000
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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