Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P10
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.9
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.3
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.7
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 7.5
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 7.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.5
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.9
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 102 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 230
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -2
Query: 696 AISXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGVKPPLSSEAPSAYLTPSSLG 517
A+ T T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 516 MXKGVSP 496
K V P
Sbjct: 741 YAKTVIP 747
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.5
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTP-X*KEFAPGVKPPLSSEAPSAYLTP 529
P ++S FHTPT P T +S +P + V PLS +A S LT
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTS 180
Query: 528 SSLGMXKGVSPPYFQVNDESQA 463
S L + SPP V +S +
Sbjct: 181 SPLKDFQS-SPPLSTVLQKSHS 201
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 257 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 162
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 356 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 177
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 176 LSASIQASLPSSEIYRQL 123
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 702 SPAISXTSTRSSNPXFHTPTTPDLTSIS 619
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 467 KLRALLVVIPRILRSPPPTHPLIEDV 390
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -3
Query: 755 PXSFXXXXGFXPYASXHPPLRFRXHQPDHQIPDSIHPP 642
P F PY+ PP + ++ + PD+ PP
Sbjct: 459 PPGFGYQQPSFPYSPGFPPSAYNQNRTGYGFPDTSRPP 496
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 696 AISXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGVKPPLSSEAPSAYLTPSS 523
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPAA 122
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 144 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 46
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 332 LVTHKELALKVSSIIGTRVYVFDPSCY 252
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 117 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 218
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -2
Query: 684 TSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGVKPPLSSEAPSAYLTPSSLGMXKG 505
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 504 VSPP 493
S P
Sbjct: 1676 TSTP 1679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,236
Number of Sequences: 5004
Number of extensions: 54232
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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