Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P10
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.48
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 32 0.64
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.5
02_01_0302 - 2021221-2023305 29 4.5
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.0
04_04_1125 + 31085106-31085714 29 6.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 6.0
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 6.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 7.9
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 28 7.9
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 32.3 bits (70), Expect = 0.48
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -2
Query: 702 SPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGVKPPLSSEAPSAYLT 532
SP+ S TS + S ++PT+P TS +P +P +P P PS +
Sbjct: 1763 SPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYS 1822
Query: 531 PSSLGMXKGVSPPY 490
PSS SP Y
Sbjct: 1823 PSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 702 SPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGVKPPLSSEAPSAYLT 532
SP+ S TS + S ++PT+P TS S +P +P +P P + +PS +
Sbjct: 1701 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYS 1760
Query: 531 PSS--LGMXKGVSPPY 490
PSS L SP Y
Sbjct: 1761 PSSPRLSPYSQTSPNY 1776
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 83 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTS--ISINPLTPX*KEFAPGVK--PPLSSEAPSAY 538
PSP S T+ S +P TPT P S ++ P P + P V+ PP S P
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSAD-RPDVRFAPPPGSYGPIPS 577
Query: 537 LTPSS 523
PSS
Sbjct: 578 TPPSS 582
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 75 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 221
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPG--VKPPLSSEAPS 544
P+PA T P TPT P T + P TP P PP + APS
Sbjct: 51 PTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPS 106
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 242 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 63
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 62 ILHSF 48
+LHSF
Sbjct: 1408 LLHSF 1412
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -2
Query: 759 PPXIFXXXXGVXPLCIKXPSPAISXTSTR-SSNP--XFHTPTTPDLTSISINPLTP 601
PP G + I PSPA + S+R S +P F TP T T+ S +P +P
Sbjct: 10 PPPPMIGRAGNLTVFITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPT---TPDLTSISINPLTPX*KEFAPGVKPPLSSEAPSAYL 535
PSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 106 PSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSDT 164
Query: 534 TPSSLGMXKGVSP 496
+P++ G G SP
Sbjct: 165 SPTTPGGGGGYSP 177
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 696 AISXTSTRSSNPXFHTPTTP 637
A S T+TR S P H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,002,767
Number of Sequences: 37544
Number of extensions: 424407
Number of successful extensions: 1227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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