Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_P10
(829 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 32 0.58
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.8
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.3
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.3
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 29 3.1
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 28 7.1
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 9.4
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 9.4
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 28 9.4
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 28 9.4
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 28 9.4
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 28 9.4
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTP---X*KEFAPGVKPPLSSEAPSAYL 535
P+P + T+T +NP TPTT + +I +P P AP V P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAP-VNPTSSTTAPTAPV 546
Query: 534 TPSS 523
P+S
Sbjct: 547 NPTS 550
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGVKPPLSSEAPSAYLTPS 526
P+P + T+T +NP TPTT TS N ++P + + AP +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 525 SLGMXKGVSPP 493
+ S P
Sbjct: 549 TTPTHTTASQP 559
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 702 SPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGVKPPLSSEAPSAYLT 532
SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 1668
Query: 531 PSSLGMXKGVSPPY 490
S SP Y
Sbjct: 1669 SPSSPRYSPTSPTY 1682
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 702 SPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPX*KEFAPGVKPPLSSEAPSAYLT 532
SP+ S TS + S ++PT+P TS S +P +P +P P S +PS+
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 1675
Query: 531 PSSLGMXKGVSPPY 490
S SP Y
Sbjct: 1676 SPSSPRYSPTSPTY 1689
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -2
Query: 705 PSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTPX*KEFAPGVKPPLSSEAPS 544
P+ S ++ + P T TP+LT++++ P+T K + P +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 722 PYASXHPPLRFRXHQPDHQIPDS 654
P +S HPPL H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 567 PLSSEAPSAYLTPSSLGMXKGVSPP 493
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 567 PLSSEAPSAYLTPSSLGMXKGVSPP 493
P+++EAP+A PS + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FRXHQPDHQIPDSIHPPP 639
+R H + +PDS HPPP
Sbjct: 16 YRDHGTSYPMPDSTHPPP 33
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FRXHQPDHQIPDSIHPPP 639
+R H + +PDS HPPP
Sbjct: 91 YRDHGTSYPMPDSTHPPP 108
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FRXHQPDHQIPDSIHPPP 639
+R H + +PDS HPPP
Sbjct: 1023 YRDHGTSYPMPDSTHPPP 1040
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FRXHQPDHQIPDSIHPPP 639
+R H + +PDS HPPP
Sbjct: 1023 YRDHGTSYPMPDSTHPPP 1040
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,243
Number of Sequences: 27780
Number of extensions: 312340
Number of successful extensions: 1076
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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