Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P09
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    50   4e-07
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   4.0  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   5.3  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   5.3  
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   5.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   9.3  

>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
 Frame = -1

Query: 627 STSKNKDSLLRLFESSLFDMNMAIEY---FHNSSGVQTYLANKLFSFPHEDVDFYLPQL 460
           S++   + LLR FES+ F   + + Y   + N+ G+  +L  KL +FP+E+++F++PQL
Sbjct: 3   SSNSGNELLLRFFESAHFTSQLCVAYLSRYPNNIGIHHFLCEKLATFPYEEIEFFIPQL 61


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 537 SGVQTYLANKLFSFPHEDVDFYL 469
           SG    LAN+L+S PHE  +F L
Sbjct: 331 SGFTERLANRLYSMPHEYPNFSL 353


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 220 VSTPPWKYLGDLTSGRAFDNGCVCGEQCSCDAPRLAPHLEVIINHSFN*ISRSIF 56
           V+TP  K+    T     DN     E+     P L   L  +INH  +  +  IF
Sbjct: 418 VTTPMTKFFLRFTKSEHDDNSIESSEELVQYLPELPTRLSFLINHPLDASAAMIF 472


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 211 ASTLSTPKRPIVFGDVLFSLPALSFRPVWILSTSSL 318
           AS + +P+R I F + LFS+PA  F  ++++ T+ L
Sbjct: 136 ASCVHSPQRLISFFN-LFSIPAYCFPIIYLIMTTIL 170


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 299 FSQLHRFRTLSNLHRTRSTTIRVAVKTPCFVYIY 400
           F Q ++      +HR  S   R+ VK  C VY+Y
Sbjct: 577 FLQCYQDLDSKQIHRAISFFYRIFVKQKCHVYLY 610


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 RRTNTVPHKHSRYRRLVQMLSPLNISKEASTLSTPKRPIV 246
           R+  T P K +    + Q+ S +  +K  S L+ PKR ++
Sbjct: 184 RKYQTKPEKFNENSSISQVTSAIKATKAFSHLTQPKRALL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,740
Number of Sequences: 5004
Number of extensions: 52588
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)