Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.93 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   4.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 318 SLISNLSNTCDLTPLPEWSCERSAWWGACGRVL 220
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 733 WFSRGLGEXSXXDPWXEGWK 674
           W    + E S   PW +GWK
Sbjct: 196 WHGDNMLEPSPKTPWYKGWK 215


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 648 GNHLXXAXPFQPSXQGSLXLXSPSPREN 731
           G+H+  A P  P  Q +L   +  P E+
Sbjct: 100 GSHIPTAPPIPPEIQRALEWNAAHPEED 127


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 733 WFSRGLGEXSXXDPWXEGW 677
           W    + E S   PW +GW
Sbjct: 123 WHGDNMLEVSSKMPWFKGW 141


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 733 WFSRGLGEXSXXDPWXEGW 677
           W    + E S   PW +GW
Sbjct: 139 WHGDNMLEVSSKMPWFKGW 157


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 733 WFSRGLGEXSXXDPWXEGW 677
           W    + E S   PW +GW
Sbjct: 196 WHGDNMLEVSSKMPWFKGW 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,565
Number of Sequences: 438
Number of extensions: 1560
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)