Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_P02
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.2  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    29   5.0  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   6.7  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.8  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 702 PCDXGYINPIIKSP-IPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS-AYLTP 529
           P +  + +P   SP  P  ++P   +P PS P   Y  E A  + PP   E PS  Y  P
Sbjct: 357 PQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQPSGGYDAP 416

Query: 528 S 526
           S
Sbjct: 417 S 417


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 663 PIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 526
           P P   +PQ   P P+ P  PY +   P   PPL+S   +A   P+
Sbjct: 51  PPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPA 96



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
 Frame = -3

Query: 711 ATLPCDXGYINPIIKSPIP-YTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYL 535
           A  P    Y    + +P P   ++PQ   P P+ P  PY +   P   PP +     A  
Sbjct: 64  APAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVP 123

Query: 534 TPSSLGMXKGVSPP 493
            P+         PP
Sbjct: 124 APAPYQQQPPPPPP 137


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 678  PIIKSPIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 523
            P +++P P ++ P T    P  P  P      P +  P +  AP+ Y   SS
Sbjct: 1064 PTVQAPAPSSSIPNTSTSIPKAPSAPVLSAAPPKIVAPAAPAAPTHYSPISS 1115


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 724 PYASSHPPLRXRXHQPDHQIPDS 656
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 678 PIIKSPIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVS 499
           P+   P PY   P+   P P I   P     AP ++P  +  AP  Y+ PS+        
Sbjct: 189 PVPARPAPYIERPEPARPAPYIE-RPVPARPAPYIEPTPARPAP--YIEPSTAKPQPRPQ 245

Query: 498 PP 493
           PP
Sbjct: 246 PP 247


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 567  PLSSEAPSAYLTPSSLGMXKGVSPP 493
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 567  PLSSEAPSAYLTPSSLGMXKGVSPP 493
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,210
Number of Sequences: 27780
Number of extensions: 346226
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)