Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_O22
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   5.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   9.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 149  SYEGPRAKGARGVCE-TQRICMV----L*ADRGPKDFRTHPLNDSPXTLTPDVRSPPRSE 313
            SY GP A G R V E  +R+  V      +DRG  D  +  L   P  L+   R+  R E
Sbjct: 1353 SYRGPSASGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSIS-RAGSRDE 1411

Query: 314  PG*GRGATAVNTTTRRR 364
                R +T ++ ++R R
Sbjct: 1412 DS-TRDSTKLDRSSRER 1427


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 KGRAGYVRLNESAWCCEQTAGP 236
           KGR  +V ++   WCC+   GP
Sbjct: 3   KGR--HVVMSCCCWCCDNLGGP 22


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 518 TRQAGSGPAGYSGTPAAPSGRPDGLPY 438
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 521  PTRQAGSGPAGYSG 480
            P+RQ GSG  G+ G
Sbjct: 1923 PSRQTGSGHGGHGG 1936


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 518 TRQAGSGPAGYSGTPAAPSGRPDGLPY 438
           T +  S P G+      P G+ +G+PY
Sbjct: 588 TFKYSSQPYGFPERLLLPKGKKEGMPY 614


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 516 PAGWFWSSGVFRDTSGTV 463
           PAGW W    F    G V
Sbjct: 162 PAGWIWGDQGFLKKLGAV 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 444 QPVGPPRRCRWCP 482
           +PV PPRR   CP
Sbjct: 336 EPVEPPRRKNNCP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,181
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)