Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_O18
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVP 772
P P PPP PP PPP PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +2
Query: 656 AXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVP 772
A P PP PP PPP PPP P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXP---PPXXVP 772
P PP P P PP PPP P T PP VP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVPXXGRXDCXSXXXPXPLXXX 829
P P P P PP P P P PPP P + P P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP--VPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Query: 830 PXP 838
P P
Sbjct: 1218 PVP 1220
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/64 (25%), Positives = 19/64 (29%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVPXXGRXDCXSXXXPXPLXXX 829
P P PP PP P P P P P P + + P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAP--PVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 830 PXPR 841
P P+
Sbjct: 1160 PVPK 1163
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/64 (25%), Positives = 19/64 (29%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVPXXGRXDCXSXXXPXPLXXX 829
P P P P PP P P P P P P + + P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVP--PVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 830 PXPR 841
P P+
Sbjct: 1141 PVPK 1144
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/64 (23%), Positives = 18/64 (28%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVPXXGRXDCXSXXXPXPLXXX 829
P P PP PP P P P P +P + P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP-VPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Query: 830 PXPR 841
P P+
Sbjct: 1199 PVPK 1202
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 680 PPPXXXXWTPPAPPPXXXTPXRTXPPP 760
PPP PP+ PP P PPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 664 PXXKXTPTXPPQXDXPCPPPXXLHPXTNPTPPXXXP 771
P + PPQ P PPP P + P PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPP---PMSVPPPPSAPP 1722
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +2
Query: 650 PXAXPPXX--KXPPPXXXXWTPPAPPPXXXTPXRTXPPPXXVP 772
P + PP PP TPP PP P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = -1
Query: 771 GTXXGGGXVRXGVXXXGGGAGGVX--LXXXGGGXFXXGGXAXGH 646
G G G G GGG GG L GGG GG GH
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 691 PPQXDXPCPPPXXLHPXTNPTPP 759
PP P PPP P + P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 662 PPXXKXPPPXXXXWTPPAPPPXXXTP 739
PP PPP + PP+ PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPPP 760
P PP PP PP PPP R P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 331 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
PPP +RS+ L D+TP+ +W ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = +1
Query: 682 PTXPPQXDXPCPPPXXLHPXTNPTPPXXXPXXXATR 789
P PP P P + P +P PP TR
Sbjct: 372 PQLPPSPSSPSSPALSVKPNIDPQPPLYNSTLTTTR 407
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 650 PXAXPPXXKXPPPXXXXWTPPAPPPXXXTPXRTXPP 757
P + PP PPP PP P P PP
Sbjct: 140 PTSAPPRPSIPPPSPAS-APPIPSKAPPIPSSLPPP 174
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,939
Number of Sequences: 5004
Number of extensions: 20770
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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