Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_O10
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    75   2e-14
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     58   1e-09
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    55   1e-08
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    43   6e-05
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    43   6e-05
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    38   0.001
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    33   0.037
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   1.8  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   4.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   5.6  

>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = -3

Query: 524 PNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTI---LYDDYE--QVAVADLPGLIPGSH 360
           PNAGKST+L  ++ ++  V  Y FTT+ P IGTI   + DD+   Q  +AD+PG+I G+ 
Sbjct: 245 PNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGIIKGAS 304

Query: 359 MNYGLGIQFLQHVERCRGLVFLLD 288
              GLG  FL+HVER + L  ++D
Sbjct: 305 DGKGLGYDFLRHVERAKMLCLVID 328


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 32/98 (32%), Positives = 50/98 (51%)
 Frame = -3

Query: 527 FPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGSHMNYG 348
           FP+ GKST++  ++  R   A Y FTTL    G + Y+   ++ + DLPG+I G+    G
Sbjct: 71  FPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNG-AKIQILDLPGIIEGAKDGRG 129

Query: 347 LGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELXG 234
            G Q +     C  L+F++     P    R++  EL G
Sbjct: 130 RGKQVITVARTC-NLIFIVLDVLKPMSHKRIIEEELEG 166


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 35/99 (35%), Positives = 52/99 (52%)
 Frame = -3

Query: 527 FPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGSHMNYG 348
           FP+ GKST+L AI++ +   A Y FTTL    G + YD  E + + DLPG+I G+    G
Sbjct: 70  FPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAE-IQMLDLPGIIEGASQGRG 128

Query: 347 LGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELXGV 231
            G Q +    R   L+ ++  ++   DQ   +  EL  V
Sbjct: 129 -GRQAVS-AARTADLILMVLDATKAADQREKIEYELEQV 165


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -3

Query: 527 FPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGSHMN 354
           +PN GKS+ +  ++RA+ +V PY FTT    +G   Y  Y +  V D PG++  P   MN
Sbjct: 176 YPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDY-KYLRWQVIDTPGILDHPLEQMN 234


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 25/117 (21%)
 Frame = -3

Query: 524 PNAGKSTVLRAISRARPNVAPYPFTTLKPH--IGTI----------LYDDYEQV------ 399
           P++GKST+L A++ A      +PFTT++P+  IG            L D  + +      
Sbjct: 13  PSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPIYGGCKN 72

Query: 398 -------AVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLR 249
                   + D+ GLIPG+H   GLG +FL  +     LV ++D S +   + +V R
Sbjct: 73  GVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSGTTDAEGKVCR 129


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
 Frame = -3

Query: 524 PNAGKSTVLRAISRA-RPNVAPYPFTTLKPHIGTILYDD---------YEQ-------VA 396
           PN GKST  RAI+++   N A YP+ T+ P    +   D         Y+        + 
Sbjct: 29  PNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLT 88

Query: 395 VADLPGLIPGSHMNYGLGIQFLQHV 321
           V D+ GL  G+    GLG  FL HV
Sbjct: 89  VFDIAGLTKGASTGVGLGNAFLSHV 113


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -3

Query: 527 FPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 363
           FPNAGKS+++  + + +  NVAP P  T       ++    +++ + D PG++P S
Sbjct: 318 FPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVALM----KRIFLIDCPGIVPPS 369


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +3

Query: 201  RAGRCASAALYPRQLTAQHAELVPGRGATVQQENQPSAPLHVLQELYTQA 350
            R  R    A  P ++  QH E V  R      +    AP HV  E Y  A
Sbjct: 1115 RGKRLFGKANAPLEIFNQHLEFVEQRNTNAMVDEGSDAPFHVGNEYYVIA 1164


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 464 PYPFTTLKPHIGTILYDDYEQVA-VADLPGLIPGSHM 357
           P P     PH G+ LY D E  A +A+ P  + G H+
Sbjct: 22  PKPLPAYYPHPGSPLYADKELYARIANAPKKLVGRHV 58


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 157 YELMRNDYDNVIGVSAKXRGQSAATAG 77
           Y L+  DYD VIGV+ K   QS  + G
Sbjct: 715 YHLL-GDYDTVIGVAIKNLSQSIVSRG 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,423
Number of Sequences: 5004
Number of extensions: 50560
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)