Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_O06
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.65
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 31 0.86
05_05_0227 - 23449579-23450459,23450574-23450691 31 1.5
03_05_1101 - 30408944-30410410 31 1.5
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 30 2.6
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 2.6
11_05_0086 + 18964493-18965737,18965896-18966360 29 4.6
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 4.6
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.6
08_02_0707 - 20212190-20214592 29 6.1
06_03_1417 + 30040938-30041177 29 6.1
03_01_0404 + 3138624-3140096 29 6.1
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 28 8.0
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 451 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 573
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 391 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 546
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 31.5 bits (68), Expect = 0.86
Identities = 27/86 (31%), Positives = 35/86 (40%)
Frame = +1
Query: 364 KLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHR 543
++ T L HH N RC+S ++ A L H H ++ L P E E R
Sbjct: 98 QIWTDMQLQDHHHECN----GPYCRCHSSSKHAKGSLLLLHHHH--QQQQLQRPNEMETR 151
Query: 544 RIARHERTGRLILQVTTTSDVSIFLP 621
R +TG L Q DVS LP
Sbjct: 152 RAEASTQTGFLRSQGICERDVSSGLP 177
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -1
Query: 269 RLDGXGGRPTGPPNDEITPPARTADIGAP 183
R DG GGRP+ P E T P R GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259
>03_05_1101 - 30408944-30410410
Length = 488
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 195 YWSPRAPAALALGCATS*ETVLWQVQPETST 103
Y+SPR LALG S LW ++PE S+
Sbjct: 294 YFSPRQVRELALGLEASNHPFLWVIRPEDSS 324
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 17 LRLHSDLEWNIKGKPKPLIYNTLKFWNTHVDVSGWTCHSTVSYEVAHPSASA 172
LRLH D +W ++ K + ++ TL +T + + W H V +V + A
Sbjct: 295 LRLHRDKQWAVQDK-RQVLQRTLTEMHTFIKHAEWWFHKDVFAQVLQDAKDA 345
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 578 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLASSV 450
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 239 GPPNDEITPPARTADIGAPALRLHLR*GAPPRRRL 135
GPP D PP T + A L H R PP R L
Sbjct: 82 GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 341 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 472
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 289 TGWAATAEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANR 468
TG A+++ + SA A + +LLT+ TSH + N T S SH + + R
Sbjct: 680 TGSASSSPATASAAAASKKP-----RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFR 734
Query: 469 EHL 477
E L
Sbjct: 735 ESL 737
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 391 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 558
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>06_03_1417 + 30040938-30041177
Length = 79
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 117 VGPATAQSPTRWRTLAQVQPERGGSNIGSPCWRRDLVVWRTCR 245
VG +P W + E GGS +G+ WR ++ V R CR
Sbjct: 28 VGQRPCAAPQPWGKGGGTEVE-GGSGVGAGGWRFEVEVIRRCR 69
>03_01_0404 + 3138624-3140096
Length = 490
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 319 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 498
PSA A + LP LLT L H + + SL R S + L +
Sbjct: 24 PSAAAAPTAPALPVQALLTTAGLLPRHPDLSLVALNSLLRVLSRRASSPAHPLLALRLLL 83
Query: 499 LHRKNLHPPAEPEH 540
L P P+H
Sbjct: 84 LMLSPASPLPPPDH 97
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 326 AEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPALRLHL 165
A+G V HP RE+ D D G P ++ A D P + + L
Sbjct: 228 ADGHDLGVVVHPWREDDDDDSDDHDGGPDDAEDEAAVQDAGVVDDSGPGVAVEL 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,848,499
Number of Sequences: 37544
Number of extensions: 519306
Number of successful extensions: 1800
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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