Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N21
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.90 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 31/131 (23%), Positives = 37/131 (28%)
 Frame = +3

Query: 393  PSRTPPXXXPXXXXXPXXXXSGXGVXPAXTPDXXXLPLXXXXPSPPXSPFRXCLXXXGGP 572
            PS  PP   P     P    SG    P   P     P+    P+P  +P          P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSG--APPVPKPSVAAPPV----PAPSGAPPVPKPSVAAPP 1170

Query: 573  XHXPXTASTXXXXXXLXXXXRPVXPPXXXXPPSSXXXLISHPCXXPNXPPPXSPXX*XXP 752
               P   S+            P  PP    PP     +   P   P+  PP        P
Sbjct: 1171 VPAP---SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227

Query: 753  PXPXTAXXXPP 785
            P P      PP
Sbjct: 1228 PVPVPTAKAPP 1238



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/50 (26%), Positives = 17/50 (34%)
 Frame = +3

Query: 636  PVXPPXXXXPPSSXXXLISHPCXXPNXPPPXSPXX*XXPPXPXTAXXXPP 785
            P  P     PP     + + P   P+   P  P     PP P  +   PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
 Frame = +2

Query: 518  PLP-PXLPXPXVLTXXGXPXPXPXHRLHLXXXXXPXTXXPSXXXPSXXXPXLLXXXPYFP 694
            P+P P +  P V    G P P P   +       P +  P    PS   P +       P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAP-SGAPPVPKPSVAAPPVPAPSSGIP 1179

Query: 695  PXPXXXHXPPXLPFXLXFXPXXXXSXXSPPLXXLSXXXXXP 817
            P P      P +P      P    S   PP+   S     P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 336 APPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 100 SPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
 Frame = +3

Query: 663 PPSSXXXLISHPCXXPNXPPPXSP---XX*XXPPXPXTAXXXPPXXXFPXP 806
           PP     ++  P   P   PP +P        PP P  A   PP    P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +2

Query: 617 PXTXXPSXXXPSXXXPXLLXXXPYFPPXPXXXHXPPXLPFXLXFXPXXXXSXXSPP 784
           P +  PS   P    P L    P  PP P      P LP  +   P    +  +PP
Sbjct: 424 PPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 330 PPPLRSLISNLSNTCDLTPLPEW 262
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,654
Number of Sequences: 5004
Number of extensions: 21648
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)