Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N17
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.76 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   1.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   7.0  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.3  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   9.3  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -1

Query: 479 PQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 303
           P +KK TLDD D P+ S   D       S +         ++E +    N+ +S P  S
Sbjct: 94  PSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNESLPGTS 152


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = -1

Query: 533  SASNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQ 354
            SA+N  ++Q + +R+   P    P+       S+   R+ HP   +    PP  ++I+  
Sbjct: 1220 SANN--VSQGTDSRLVTKPTSTFPSPPSPPSSSVWNKREHHPKPFSLHQVPPPESLIHKS 1277

Query: 353  EMQALKNNQTQSQPKKSQRSXGG 285
            + +  K N   +   +S R  GG
Sbjct: 1278 KSKFSKGNHHSTNGTQSIRGRGG 1300


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 518 RLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNI 402
           R  +T+ +R + PPQ +    +D+D    S   DD P I
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLPVI 148


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 395 SSVQPPKVTMINSQEMQALKNNQTQSQPKKS--QRSXGGVPCAVRHRPLPRRTPAVDHRF 222
           S+++PP     +S ++Q LK+  +  QP ++   RS      + +  P  R T +   + 
Sbjct: 124 SALEPPSSNSSSSPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTLSSSQKA 183

Query: 221 QR 216
           +R
Sbjct: 184 KR 185


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 434 LSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSXGGVPCAVRHRPL 255
           L MG++      +  V   K   + S E  +++NN+T+ QP K       +   V + P 
Sbjct: 355 LEMGKNSKKYYNSGFVNGRKTYELKSIEQFSIENNKTE-QPGKQYFGEKTLDAIVLNYPR 413

Query: 254 PRRTP 240
            + TP
Sbjct: 414 RKTTP 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,664
Number of Sequences: 5004
Number of extensions: 35669
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)