Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N14
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    31   0.19 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.58 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   5.4  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.5  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 414 NLHPPAEPEHRRIARHERTGRLILQVTTNSDV 509
           NL  PAE +HRR+ R +R G L   +  NS +
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPLDKDLKPNSKI 266


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +3

Query: 219 ISSFGGPVGRPPXQSRRSARFSRTGWAATAEVSPPATSLTRCYSHTEEANREHLSSTHKH 398
           +     P+GR     R  A+ S    + T + SPP  S +     TE++N +   S  + 
Sbjct: 446 LPGLAAPIGRKNTLRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKE- 504

Query: 399 ALHRKNLHPPAEPEHRRIARHERT 470
               + L  P+EP   + A +  T
Sbjct: 505 --EERPL--PSEPSQNQPAEYRDT 524


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 521  SPRXTCLLSCLLACWSPEVIERVVLLVLNRVDSKISATIHSLMSWFTVL 667
            S R   L+ C+ +  +P++  + +LLV    ++   A +H +M  FT +
Sbjct: 856  SIRIDTLVGCIRSTNNPQIQNKALLLVSALANAAPEAVLHGVMPIFTFM 904


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +3

Query: 261 SRRSARFSRTGWAATAEVSPPATSLTRCYSHTEEANR---EHLSSTHKHALHRKNLHPPA 431
           S ++A  S T     +     +TS +R  S      R   E   S H+H  HR++     
Sbjct: 101 SSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRH----- 155

Query: 432 EPEHRRIARHER 467
           EP    ++RH R
Sbjct: 156 EPYRTHLSRHHR 167


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 349 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 468
           P L +PT+   Q R      GK  +   NP +  SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,853
Number of Sequences: 5004
Number of extensions: 59870
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)