Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N07
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   112   4e-26
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   109   5e-25
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.001
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.8  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   4.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  112 bits (270), Expect = 4e-26
 Identities = 54/85 (63%), Positives = 62/85 (72%)
 Frame = -3

Query: 623 PXXXIVMDPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
           P   +V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LL
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180

Query: 443 AREVLRLRGVLPRDQRWDVVVDLFF 369
           AREVLR+RG L R   WDV+ DL+F
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  109 bits (261), Expect = 5e-25
 Identities = 53/85 (62%), Positives = 61/85 (71%)
 Frame = -3

Query: 623 PXXXIVMDPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
           P   IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LL
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181

Query: 443 AREVLRLRGVLPRDQRWDVVVDLFF 369
           AREVLRLRG + R   W+V+ DL+F
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYF 206


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 623 PXXXIVMDPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 444
           P   ++++P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 443 AR 438
           +R
Sbjct: 240 SR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 373 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 471
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 545 IALCNTDSPLRFVDIAIPCNTKSSHSI 465
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 351 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 494
           L G+R  +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,895
Number of Sequences: 5004
Number of extensions: 40404
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)