Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N05
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.61 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.7  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.5  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 338 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 809 KGXXGNXRVGFKXGQXXRXWFGGGPREXSGXXSQGG 702
           +G  G  R GF  G   R  FGGG R   G  S+GG
Sbjct: 144 RGGRGGSRGGF--GGNSRGGFGGGSRGGFGGGSRGG 177


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 708 GGVEFDRXXHGGXEPGPXGXXSWRGXFXKGXSGTGPG 598
           GG       HGG   GP G     G F  G  G G G
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
 Frame = +2

Query: 479  NIEMNAETAXIGGPVAGGKALXGNQKQEHTXETXPAPTRFPGPVPXKPLXXLP---RQLX 649
            +I  + + A +   + GG A               AP +   P P  P   +P       
Sbjct: 1663 DIRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722

Query: 650  XPQGPGSXPPWXXRSNSTPPDXN 718
             P GP S PP    ++S P   N
Sbjct: 1723 MPAGPPSAPPPPLPASSAPSVPN 1745


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/76 (23%), Positives = 23/76 (30%)
 Frame = +2

Query: 518 PVAGGKALXGNQKQEHTXETXPAPTRFPGPVPXKPLXXLPRQLXXPQGPGSXPPWXXRSN 697
           P  GG    G  K  H  ++  +      P P  P   L      P  P   PP    + 
Sbjct: 99  PALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAP 158

Query: 698 STPPDXNXLIXPLVPP 745
             P     +   L PP
Sbjct: 159 PIPSKAPPIPSSLPPP 174


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/90 (21%), Positives = 30/90 (33%)
 Frame = +2

Query: 476 HNIEMNAETAXIGGPVAGGKALXGNQKQEHTXETXPAPTRFPGPVPXKPLXXLPRQLXXP 655
           H  ++ A  +  G          GNQ       + P+ ++ P   P +P          P
Sbjct: 65  HASQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQ-PSQPPKEPALPSRGTPSLP 123

Query: 656 QGPGSXPPWXXRSNSTPPDXNXLIXPLVPP 745
             PGS P    +    PP     +   +PP
Sbjct: 124 SRPGSRPSVLNQEQVPPPPVRPNVMSQMPP 153


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,076
Number of Sequences: 5004
Number of extensions: 29098
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)