Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_N03
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.022
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.089
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.63
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.4
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 568 PPXXPPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPPXPXXXPP 723
PP P P P + P P P P PP P PP P PP
Sbjct: 124 PPSAPAPPTPQSELRP--PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Frame = +1
Query: 547 PXXXXXXPPXXPPPXXPXXPVXXXXPPXXXXXPXXXXP-----XPXXXPPXPXPXPPXPX 711
P P PP P+ PP P P P P P PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 712 XXPP 723
PP
Sbjct: 200 KVPP 203
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/76 (26%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Frame = +1
Query: 505 PPXXAXXXXTXGXGPXXXXXXPPXX---PPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXX 675
PP + + P PP PPP P PV P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS---------PPSAPSLPSAV 194
Query: 676 PPXPXPXPPXPXXXPP 723
PP P PP P P
Sbjct: 195 PPMPPKVPPPPLSQAP 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.089
Identities = 22/88 (25%), Positives = 24/88 (27%)
Frame = +2
Query: 548 PPXXXXXPPXXXPRXSPXXXSXXXAXPXXXXXPPXXXPPXXXXPXXXXPXPPXPXXLPPX 727
P PP P +P A P P PP P PP P PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA-PSSGIPPVPKPAAGVPPVPP-PSEAPPV 1200
Query: 728 XXXXXXXXXXPXPXXXPXXPXXTXXXPP 811
P P P P + PP
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 29.5 bits (63), Expect = 0.63
Identities = 23/94 (24%), Positives = 24/94 (25%), Gaps = 7/94 (7%)
Frame = +2
Query: 551 PXXXXXPPXXXPRXSPXXXSXXXAXPXXXXX----PPXXXP---PXXXXPXXXXPXPPXP 709
P PP P P A P PP P P P P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 710 XXLPPXXXXXXXXXXXPXPXXXPXXPXXTXXXPP 811
PP P P P P + PP
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/59 (27%), Positives = 17/59 (28%)
Frame = +1
Query: 547 PXXXXXXPPXXPPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPPXPXXXPP 723
P PP P P P+ PP P P PP P P P P
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPV----PKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +1
Query: 547 PXXXXXXPPXXPPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPPXPXXXPP 723
P PP PP P P+ P P P P P P PP PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAPPP 478
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/68 (25%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Frame = +1
Query: 505 PPXXAXXXXTXGXGPXXXXXXPPXXP---PPXXPXXPVXXXXPPXXXXXPXXXXPXPXXX 675
PP P PP P P P P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 676 PPXPXPXP 699
P P P P
Sbjct: 475 APPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.63
Identities = 16/62 (25%), Positives = 16/62 (25%)
Frame = +1
Query: 538 GXGPXXXXXXPPXXPPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPPXPXXX 717
G P PP P P PP P P P P PP P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
Query: 718 PP 723
P
Sbjct: 1740 AP 1741
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Frame = +1
Query: 568 PPXXPP----PXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPPXP 708
PP PP P P+ P P P P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +1
Query: 547 PXXXXXXPPXXPPPXXPXXPVXXXXPPXXXXXPXXXXPXPXXXPPXPXPXPP 702
P P P P P P+ PP P PP P P PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPP-----PPPPPGVAGAGPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/96 (23%), Positives = 25/96 (26%), Gaps = 6/96 (6%)
Frame = +1
Query: 454 PXGSSPXXXXXXXXXXXPPXXAXXXXTXGXGPXXXXXXPPXXPPPXXPXXPVXXXXPPXX 633
P S+P PP A + P PP PPP P
Sbjct: 156 PTVSAPNSMVSPPPSFQPPSAAAPATSL---PSDYNPPPPPPPPPAVEDQAADANEPDDY 212
Query: 634 XXXPXXXXPX------PXXXPPXPXPXPPXPXXXPP 723
P P P P P PP P PP
Sbjct: 213 YSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,812
Number of Sequences: 5004
Number of extensions: 14280
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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