Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_N01
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   5.3  
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    29   5.3  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     29   5.3  
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388...    28   7.0  
03_05_0301 + 22928864-22929787                                         28   7.0  
07_03_0890 - 22332768-22333382                                         28   9.2  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/42 (47%), Positives = 20/42 (47%)
 Frame = -1

Query: 712 PPXPLXXXPXXPPPSXXAPELXWKQRYQTPLHPPLHHAITDE 587
           PP P    P  PPPS   P     QRY TP  PP   AIT E
Sbjct: 288 PPEPTKPKP--PPPSPPPPPQQPSQRYWTP--PP---AITPE 322


>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 679 PPPSXXAPELXWKQRYQTPLHPPLHHAITD 590
           P  +   PE    +++ +P HPP HH+ +D
Sbjct: 465 PVQTVDLPEETKHEKFMSPWHPPSHHSSSD 494


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = -1

Query: 724 YXGGPPXPL--XXXPXXPPPSXXAPELXWKQRYQTPLH 617
           Y G PP PL     P  PPP      L     +  PLH
Sbjct: 223 YTGNPPQPLEKDASPQPPPPKPAPSRLESSLSFSAPLH 260


>12_01_0490 +
           3878436-3878466,3878559-3879113,3879218-3879777,
           3880660-3880965,3881071-3881202,3881623-3881756,
           3881939-3882015,3882084-3882226,3883376-3883633,
           3884085-3884111
          Length = 740

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 78  LDVTNSYLEPWKIQDEHVGSSSLLGMKRVAVWMYVEDGWDA*VDVPE 218
           L+  + Y E W    EHVG+ S +      + + VEDG    + VPE
Sbjct: 432 LEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPE 478


>03_05_0301 + 22928864-22929787
          Length = 307

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 176 HPHGHPFHPQETTAPHMLVLYLPRLKIRIRHIQA 75
           HPH H  H Q   A HM ++ + R +  +R  QA
Sbjct: 178 HPHHHHHHQQMVNAQHMALVEVARDQDMLRARQA 211


>07_03_0890 - 22332768-22333382
          Length = 204

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -1

Query: 718 GGPPXPLXXXPXXPPPSXXAPELXWKQRYQTPLHPP 611
           G PP P       PPP    PE    +   TP  PP
Sbjct: 73  GSPPPPPAEATPPPPPPPPPPERAVPEAADTPPPPP 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,561
Number of Sequences: 37544
Number of extensions: 279748
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)