Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M24
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   156   2e-38
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   153   1e-37
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.5  
06_03_0543 + 21967787-21970261                                         29   6.1  
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833     29   6.1  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   8.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  156 bits (379), Expect = 2e-38
 Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
 Frame = -1

Query: 735 RPFGQXVX*XXXAHRX-YAYWGTFHXRCFTNQIQAAFREPRLLIVXDPAQDHQPITEASY 559
           RP+GQ        +   +A  G      FTNQ+Q +F EPRLLI+ DP  DHQPI E++ 
Sbjct: 84  RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESAL 143

Query: 558 VNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 379
            NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+V
Sbjct: 144 GNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203

Query: 378 DLFFYRDPEESEKDEQQAKEQ 316
           DLFFYRDPEE+++ E++A  Q
Sbjct: 204 DLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  153 bits (372), Expect = 1e-37
 Identities = 71/137 (51%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
 Frame = -1

Query: 735 RPFGQXVX*XXXAHRX-YAYWGTFHXRCFTNQIQAAFREPRLLIVXDPAQDHQPITEASY 559
           RP+GQ        +   +A  G      FTNQ+Q +F EPRLLI+ DP  DHQPI E++ 
Sbjct: 84  RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESAL 143

Query: 558 VNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 379
            NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+V
Sbjct: 144 GNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203

Query: 378 DLFFYRDPEESEKDEQQ 328
           DLFFYRDPEE+++ E++
Sbjct: 204 DLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
          Length = 359

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 666 HXRCFTNQIQAAFRE-PRLLIVXDPAQDHQPITEAS 562
           H  CF+N ++  F + P LL   DPA DH  ++ AS
Sbjct: 245 HVTCFSNALEGQFLDTPYLLPAADPA-DHLAMSSAS 279


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,854
Number of Sequences: 37544
Number of extensions: 379218
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)