Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M22
         (824 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   34   0.72 
L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.    33   1.7  
BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,...    33   1.7  
BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,...    33   1.7  
BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,...    33   1.7  
AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor...    33   1.7  
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          31   5.1  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    31   5.1  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    31   5.1  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   5.1  

>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 28/84 (33%), Positives = 39/84 (46%)
 Frame = -3

Query: 393 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 214
           RSR +   + S+   + S+S  +    +S S   +       S SSS+ S +T GS+S  
Sbjct: 428 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS-- 485

Query: 213 THRHSPLSFSPDLLSGSRFRSGGR 142
             R S  S S    S SR RS GR
Sbjct: 486 --RDSSSSTSTSSSSESRSRSRGR 507


>L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 32/92 (34%), Positives = 43/92 (46%)
 Frame = -3

Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 142
             GS+S  T R S  S S    S SR R   R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134


>BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 32/92 (34%), Positives = 43/92 (46%)
 Frame = -3

Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 142
             GS+S  T R S  S S    S SR R   R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134


>BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 32/92 (34%), Positives = 43/92 (46%)
 Frame = -3

Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 142
             GS+S  T R S  S S    S SR R   R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134


>BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 32/92 (34%), Positives = 43/92 (46%)
 Frame = -3

Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 47  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 142
             GS+S  T R S  S S    S SR R   R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134


>AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor
           RNPS1 protein.
          Length = 282

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 32/92 (34%), Positives = 43/92 (46%)
 Frame = -3

Query: 417 GTT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 238
           G T E S + R +  TR  R     S+S ++R   SS S +G+       S SSS+ + +
Sbjct: 24  GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81

Query: 237 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 142
             GS+S  T R S  S S    S SR R   R
Sbjct: 82  RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 111


>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 351  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 351  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP205
            protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 351  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP220
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 351  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 217
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,134,043
Number of Sequences: 237096
Number of extensions: 2429797
Number of successful extensions: 8910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8888
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)