Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M17
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.36 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.3  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    29   4.4  
03_05_0183 - 21681673-21682524                                         29   4.4  
07_03_0414 + 17892133-17893590                                         28   7.7  
01_06_0695 - 31292622-31293317                                         28   7.7  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 87  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 215
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 443 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 345
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 325 SLWSPESSGGSKQCDFTSRVSHSKRETRRRSPFGS 221
           S+WSP+  G S +C    ++  S+  + R SP  S
Sbjct: 299 SVWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRS 333


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 655 SQAFIATLLFDPSMSALPIIAKQNSPS 575
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 435 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 611
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 612 DIEGSKSNVAMNAWLPQ 662
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 39  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 173
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,851,029
Number of Sequences: 37544
Number of extensions: 503961
Number of successful extensions: 1390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)