Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M16
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.37 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.5  
11_01_0731 - 6060680-6060982                                           29   4.6  
10_06_0054 - 10122703-10122983,10123549-10125376                       28   8.0  
01_06_0695 - 31292622-31293317                                         28   8.0  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 206
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 434 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 336
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>11_01_0731 - 6060680-6060982
          Length = 100

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 434 GHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGQGYA 315
           G   HALG   GG +  +AG C      E ++   G G A
Sbjct: 8   GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGGGGLA 47


>10_06_0054 - 10122703-10122983,10123549-10125376
          Length = 702

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 446 NRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGQGYAHCGAPRVG 291
           ++S  HLV  LG AAG  K+     CL     E  +          G+P VG
Sbjct: 318 DKSVAHLVKKLGGAAGNGKVQVKHPCLQTGYKEDYICSYCHPLKLDGSPSVG 369


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 30  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 164
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,565,612
Number of Sequences: 37544
Number of extensions: 484328
Number of successful extensions: 1321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)