Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M15
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 3.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.2
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.2
03_05_0183 - 21681673-21682524 29 4.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 5.6
07_03_0846 - 21983581-21986055 29 5.6
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 29 5.6
01_06_0695 - 31292622-31293317 28 7.4
05_02_0165 - 7256178-7256444 28 9.8
03_03_0067 + 14230211-14231506 28 9.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 89 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 217
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 357 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETLRRSPFGS 223
A+ A +GK + E E S+QCD T + +S RE +R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREK-KRNPYAA 473
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 444 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 346
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Frame = +2
Query: 20 LSSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 199
L +DESP A S R PS RQ++++ D R + E P V K
Sbjct: 492 LGRADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSK 547
Query: 200 KTDSIDLRDPNGL----RRSVSRFECETRLVKSHCLEPP 304
+ PN +VSR E ET+ K + + P
Sbjct: 548 LEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 657 SQAFIATLLFDPSMSALPIIAKQNSPS 577
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +2
Query: 26 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 205
S +SPG L R HD +L KSST + R E SR +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787
Query: 206 DSID 217
+S++
Sbjct: 788 ESVE 791
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 215 DLRD-PNGLRRSVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 364
DL+D G +R+V +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVP-LQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 338 ARICSLWSPESREALNNVTLLVAFRIQNARRYVEA 234
AR C W PESR ++ V ++A ++R++ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 41 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 175
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>05_02_0165 - 7256178-7256444
Length = 88
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 474 LLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 307
L S R+ S G A+G+ P+ GLC +E + E+GK T R+
Sbjct: 19 LASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74
>03_03_0067 + 14230211-14231506
Length = 431
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 553 LLMGEQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSLVGNFSW 696
L +GE++N WR + R+ + + + R Y RL +SL G W
Sbjct: 191 LRVGEKNNVWRKIARHPAPA---GVVESRTYIRLGGAPPVSLHGCLHW 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,730,968
Number of Sequences: 37544
Number of extensions: 441838
Number of successful extensions: 1313
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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