Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M10
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 143 3e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 140 2e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.79
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 143 bits (346), Expect = 3e-35
Identities = 67/102 (65%), Positives = 79/102 (77%)
Frame = -2
Query: 640 REPRLLIVMDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 461
REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178
Query: 460 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 335
LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 30.3 bits (65), Expect = 0.34
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1
Query: 707 GVTXIAGRFTPGAFXNQI 654
G T IAGRFTPG F N I
Sbjct: 97 GATAIAGRFTPGNFTNYI 114
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 780 PRXXFFIXSRPXGQXXVMKFAAHTRCYAYCGTF 682
P + +R G V+KFAAHT A G F
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 140 bits (339), Expect = 2e-34
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = -2
Query: 640 REPRLLIVMDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 461
REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179
Query: 460 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 341
LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 32.7 bits (71), Expect = 0.064
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -3
Query: 780 PRXXFFIXSRPXGQXXVMKFAAHTRCYAYCGTF 682
P I SRP G V+KFAAHT A G F
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Score = 30.3 bits (65), Expect = 0.34
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1
Query: 707 GVTXIAGRFTPGAFXNQI 654
G T IAGRFTPG F N I
Sbjct: 98 GATAIAGRFTPGNFTNYI 115
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = -2
Query: 670 LLXTRSKLHXREPRLLIVMDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 491
L+ T K P L+++++P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 490 SSHSIGLMWWLLAR 449
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 673 VLLXTRSKLHXREPRLLIVMDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAIP 503
VL ++ +P + ++ D + T A + + LC+ +S RF D+A+
Sbjct: 43 VLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAVA 101
Query: 502 CNTKSSHSI 476
NTK +H I
Sbjct: 102 ANTKFTHFI 110
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 384 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 482
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 478 IGLMWWLLAREVLRLRGVLPRDQRWD 401
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 423 FPVTSAGML--WLICSSTVTLKKVKRM 349
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,123
Number of Sequences: 5004
Number of extensions: 52823
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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