Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M08
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   4.0  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   4.0  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 85  TQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTTRRRGSPQGRPADGAFE 261
           T RS G +S     G   P +   P  +  RRG   T    T R + +P+  P D + E
Sbjct: 139 TTRS-GRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNE 196


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 580 PLRTYPSPPSRGSEKGLCPTPAPVDGGFPPVKVKGRPE 467
           P   YP+ P++    G  P   P+D   P V   G P+
Sbjct: 136 PYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,662
Number of Sequences: 5004
Number of extensions: 39308
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)