Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M08
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 31 1.4
06_03_0941 + 26179682-26182327 30 1.8
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.4
02_03_0068 + 14711891-14712418 29 4.2
01_01_0846 - 6606054-6606239 29 4.2
02_02_0294 - 8651289-8651395,8651527-8651776 29 5.5
05_04_0454 + 21383068-21384525 28 7.3
02_05_0409 - 28723534-28724646 28 7.3
01_01_1015 + 8029884-8030676,8030755-8030771 28 7.3
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 26 8.6
05_05_0392 + 24629528-24630442 28 9.7
01_03_0110 + 12633492-12633751,12634616-12634715,12635990-126360... 28 9.7
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 89 NDLRVLRADRGPKDFRTHPLNDSPXTLTPDEVGGLPRSTLQPDGAAHPKDAQPTEP 256
N R+LR D G + + L + + D +PR L P+ A P+D T P
Sbjct: 1955 NICRLLRFDDGREMYAKFKLRPADPDVPEDSGKVVPRGILPPETGAIPRDEDDTRP 2010
>06_03_0941 + 26179682-26182327
Length = 881
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 44 YEVPAHTGRAGYVRLNDLRVLRADRG-PKDFRTHPLNDSPXTLTPDEVGG 190
Y P + + Y+ + +L+ +RG P F +D+P +T D VGG
Sbjct: 377 YPNPPNPDKVLYINKKEAPLLKVERGVPVTFSVEAGHDAPLYITSDAVGG 426
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 565 PSPPSRGSEKGLCPTPAPVDGGFPPVKVKGRPEG 464
P PP G +KG P P P G P G P G
Sbjct: 365 PPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTG 398
>02_03_0068 + 14711891-14712418
Length = 175
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 70 RGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTTRRRG-SPQGRPA 246
RG E ++ ES R + PP + RRG A++ T RRRG P R A
Sbjct: 70 RGGGEEEKEEEEESPGRRRRNGSPPQEEAQRRRCGRRGGAASSSPPTPRRRGLLPVDRAA 129
Query: 247 D 249
D
Sbjct: 130 D 130
>01_01_0846 - 6606054-6606239
Length = 61
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -1
Query: 240 ASLG*AAPSGCSVDRGSPPTSSGVRVXG 157
A+LG P CSV +GS SSGV V G
Sbjct: 2 AALGWEEPRRCSVGKGSGGRSSGVAVLG 29
>02_02_0294 - 8651289-8651395,8651527-8651776
Length = 118
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 169 KSXRGVV*WVGPKILGPAICSQHPQIVESHIPR 71
+ R ++ +V P++ GPA+CS+ P I PR
Sbjct: 43 RGDRPILDFVPPRLDGPALCSEIPPISAHPFPR 75
>05_04_0454 + 21383068-21384525
Length = 485
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Frame = +2
Query: 143 PLNDSPXTLTPDEVGGLPRSTLQPDGAAHP---KDAQPTEPSRRIEGSETSAVSXXXXXX 313
PL+D D+ LPR PDGA P + + R S A S
Sbjct: 88 PLDDDDDDEVEDDDHDLPRPPDDPDGARSPGPSHSERMAKTDRSTTASHAEAASTVTTPC 147
Query: 314 XXXXXXXXXGI---PRWTRTSLP 373
G+ PR T TSLP
Sbjct: 148 SHAADDGGHGVTTSPRTTTTSLP 170
>02_05_0409 - 28723534-28724646
Length = 370
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 432 SALPRSYERATGWQCIASRPGRLVLVQRGIPGHQRHCLGGLTGCRTETADVSEP 271
+AL SY ++S G LVL++R P H H + LTG + P
Sbjct: 79 AALLSSYPVPGDATLLSSSRGHLVLLRRRDPFHGLHLVDALTGATRHALPLPSP 132
>01_01_1015 + 8029884-8030676,8030755-8030771
Length = 269
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/119 (20%), Positives = 46/119 (38%)
Frame = +1
Query: 58 AYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTTRRRGSPQG 237
A AR E +R RA+ D + L + + + A + ++ +P+
Sbjct: 150 AAAAREQAERLIREAAAARKRARDMVDVACRVLEAEARDAKEQAAAPPSPVLTKKTTPKN 209
Query: 238 RPADGAFEANRRL*NVGRLGTAARQAAQTVPLVPRNTPLDQNQPAGSGRDTLPTGRSFV 414
A+ + + ++ ++ + A AA +TPL PAG R + GR +
Sbjct: 210 SAANRSSDKPLKINSIQKPALAFAAAAAAAAAAASSTPLSTPSPAGE-RKPMKQGRVLI 267
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 25.8 bits (54), Expect(2) = 8.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 337 PRNTPLDQNQPAGSGRDT 390
PR +P D P GS RDT
Sbjct: 199 PRGSPRDSRSPKGSPRDT 216
Score = 20.6 bits (41), Expect(2) = 8.6
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 109 SRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTTRRRGSPQGRPAD 249
SRSR+ P + +R R + + + R SP+G P D
Sbjct: 159 SRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGSPRD 205
>05_05_0392 + 24629528-24630442
Length = 304
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/73 (28%), Positives = 25/73 (34%)
Frame = +1
Query: 55 RAYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTTRRRGSPQ 234
RA RG AG RA PP +R P TRR +RR +
Sbjct: 149 RARRDRGPAAAVHGAGRPGGGRASPSPPPPPRREPGERPTRRSPSPATKRPPDQRRTAAS 208
Query: 235 GRPADGAFEANRR 273
A GA +R
Sbjct: 209 AGAAAGAASGPQR 221
>01_03_0110 +
12633492-12633751,12634616-12634715,12635990-12636085,
12636670-12636717,12636819-12636914
Length = 199
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 175 RRGRGATAVNTTTRRRGSPQGRPA 246
RRG G +++++R R P RPA
Sbjct: 51 RRGEGKVKISSSSRARAKPMSRPA 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,058
Number of Sequences: 37544
Number of extensions: 407346
Number of successful extensions: 1606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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