Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M08
         (786 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051977-1|AAK93401.1|  931|Drosophila melanogaster LD44526p pro...    30   4.1  
AY032851-1|AAK51129.1|  960|Drosophila melanogaster Cornetto pro...    30   4.1  
AE014296-1202|AAF50605.2|  960|Drosophila melanogaster CG32386-P...    30   4.1  
L06475-1|AAB59219.1|  226|Drosophila melanogaster brain-specific...    29   7.2  
AE014297-542|AAF54076.2|  428|Drosophila melanogaster CG1988-PA,...    29   9.5  
AE014297-541|AAO41513.1|  578|Drosophila melanogaster CG1988-PB,...    29   9.5  

>AY051977-1|AAK93401.1|  931|Drosophila melanogaster LD44526p
           protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 34  PNLLRGPRAYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTT 213
           PN L   RA   + + + QR+  + SR+R  G      +        RRG   T   TT 
Sbjct: 171 PNALN--RAQSVQRLTQVQRTPSL-SRARTPGTPSDDGRWPANRGAARRGMSVTPEVTTN 227

Query: 214 RRRGSP 231
           R RGSP
Sbjct: 228 RMRGSP 233


>AY032851-1|AAK51129.1|  960|Drosophila melanogaster Cornetto
           protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 34  PNLLRGPRAYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTT 213
           PN L   RA   + + + QR+  + SR+R  G      +        RRG   T   TT 
Sbjct: 200 PNALN--RAQSVQRLTQVQRTPSL-SRARTPGTPSDDGRWPANRGAARRGMSVTPEVTTN 256

Query: 214 RRRGSP 231
           R RGSP
Sbjct: 257 RMRGSP 262


>AE014296-1202|AAF50605.2|  960|Drosophila melanogaster CG32386-PA
           protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 34  PNLLRGPRAYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVNTTT 213
           PN L   RA   + + + QR+  + SR+R  G      +        RRG   T   TT 
Sbjct: 200 PNALN--RAQSVQRLTQVQRTPSL-SRARTPGTPSDDGRWPANRGAARRGMSVTPEVTTN 256

Query: 214 RRRGSP 231
           R RGSP
Sbjct: 257 RMRGSP 262


>L06475-1|AAB59219.1|  226|Drosophila melanogaster brain-specific
           homeobox protein protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +1

Query: 25  GLGPNLLRGPRAYGARGVCETQRSAGVESRSRAQGF*DPPTKRLPXHSYTRRGRGATAVN 204
           G+G N LR  R   AR V    + +G+E R   Q +  PP +       T  G   T V 
Sbjct: 121 GMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSPPER---VELATALGLSETQVK 177

Query: 205 TTTRRRGSPQGRPADGA 255
           T  + R     +   GA
Sbjct: 178 TWFQNRRMKHKKQLAGA 194


>AE014297-542|AAF54076.2|  428|Drosophila melanogaster CG1988-PA,
           isoform A protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 565 PSPPSRGSEKGLCPTPAPVDGGFP-PVKVKGRPEG 464
           PSPP     K   P+P P     P P K K  PEG
Sbjct: 337 PSPPPAQPPKAANPSPPPSKAAPPSPPKPKANPEG 371


>AE014297-541|AAO41513.1|  578|Drosophila melanogaster CG1988-PB,
           isoform B protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 565 PSPPSRGSEKGLCPTPAPVDGGFP-PVKVKGRPEG 464
           PSPP     K   P+P P     P P K K  PEG
Sbjct: 487 PSPPPAQPPKAANPSPPPSKAAPPSPPKPKANPEG 521


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,653,555
Number of Sequences: 53049
Number of extensions: 615045
Number of successful extensions: 2884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2881
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3634208604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)