Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M06
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 219 4e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 219 4e-58
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.82
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 219 bits (535), Expect = 4e-58
Identities = 105/161 (65%), Positives = 124/161 (77%)
Frame = -2
Query: 590 GTQRSXPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
GT+R PRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 230 TKKAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
T + ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 72.5 bits (170), Expect = 7e-14
Identities = 35/71 (49%), Positives = 42/71 (59%)
Frame = -3
Query: 829 YXXVXRXXAHXQMKXLXQGQKXAHXMEIQXXGXTXEXKVKWAXEHXEKPIPFDSVFAQDE 650
Y V R AH Q++ QK AH MEIQ G + KV+WA EH EK + S F Q+E
Sbjct: 154 YCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213
Query: 649 MIDCIGVTXGQ 617
MID IGVT G+
Sbjct: 214 MIDVIGVTRGK 224
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 645 LTALGSPRGKGYXGVTSRWHTKKL 574
+ +G RGKG G T+RW TK+L
Sbjct: 215 IDVIGVTRGKGNEGTTARWGTKRL 238
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 219 bits (535), Expect = 4e-58
Identities = 105/161 (65%), Positives = 124/161 (77%)
Frame = -2
Query: 590 GTQRSXPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 411
GT+R PRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 410 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 231
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 230 TKKAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
T + ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 72.5 bits (170), Expect = 7e-14
Identities = 35/71 (49%), Positives = 42/71 (59%)
Frame = -3
Query: 829 YXXVXRXXAHXQMKXLXQGQKXAHXMEIQXXGXTXEXKVKWAXEHXEKPIPFDSVFAQDE 650
Y V R AH Q++ QK AH MEIQ G + KV+WA EH EK + S F Q+E
Sbjct: 154 YCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNE 213
Query: 649 MIDCIGVTXGQ 617
MID IGVT G+
Sbjct: 214 MIDVIGVTRGK 224
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 645 LTALGSPRGKGYXGVTSRWHTKKL 574
+ +G RGKG G T+RW TK+L
Sbjct: 215 IDVIGVTRGKGNEGTTARWGTKRL 238
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.82
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 399 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 497
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 366 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 488
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 351 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 479
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,127
Number of Sequences: 5004
Number of extensions: 66465
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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